Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108812375
Identifier: 108812375
GI number: 108812375
Start: 2499538
End: 2500005
Strand: Reverse
Name: 108812375
Synonym: YPN_2214
Alternate gene names: NA
Gene position: 2500005-2499538 (Counterclockwise)
Preceding gene: 108812379
Following gene: 108812374
Centisome position: 55.13
GC content: 35.47
Gene sequence:
>468_bases ATGAGTTTAATAAAATCCACCCTAATTTTTGGGGTATTGTTGGTGGTTTCGTTTGGTACTTTAGCTATGTCTGATGAGTG TAAGCAAGCATACGGTATCTTTGACGATGCCGCTTATTTTTCAGGTAAAATGAACGTGAAACCAGGCGATGGTAAAGAAG TTACAAAAACAAATGTCAATGTCGAAGCTTTTAATGAATGGTATTACCGTTCATATGATGATGAGTGGATGGCTGTACTA GAAAAATATACAAAATTTAAGGGCGTGGATGATGATAGTGTCATAGGAATTTCTTTGCTCGCATTTATCGAAACGTCAGG TTTAGTGGAGTTTTATAAAAGCTATATAGACTTCCTAACTGATTTCCCTAAAAGAACAGATACTTATCTTGTTAGTGGTC GAGTAGAAGCTGCAAAGAAAAAAATTGATGATGCCTATAAAGAACTCGTCGGCCATTGTAATAAATAA
Upstream 100 bases:
>100_bases CCTTGGCGGTGGTACTAAAAACCGGAGGGATTACATAGCCAACGTACATGCAACTTGAAGTATGACGGGGTCTTGGCAAA AAATAAGACAAGGAATGATG
Downstream 100 bases:
>100_bases AAATAATTAGTGAGAGCGATTAGGGGGAGGTTATATCATCAATAATCTTCAGCAACTGAAAACCGCCGTCGCAGTGTAAT TCCCCCCAATATTTAGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MSLIKSTLIFGVLLVVSFGTLAMSDECKQAYGIFDDAAYFSGKMNVKPGDGKEVTKTNVNVEAFNEWYYRSYDDEWMAVL EKYTKFKGVDDDSVIGISLLAFIETSGLVEFYKSYIDFLTDFPKRTDTYLVSGRVEAAKKKIDDAYKELVGHCNK
Sequences:
>Translated_155_residues MSLIKSTLIFGVLLVVSFGTLAMSDECKQAYGIFDDAAYFSGKMNVKPGDGKEVTKTNVNVEAFNEWYYRSYDDEWMAVL EKYTKFKGVDDDSVIGISLLAFIETSGLVEFYKSYIDFLTDFPKRTDTYLVSGRVEAAKKKIDDAYKELVGHCNK >Mature_154_residues SLIKSTLIFGVLLVVSFGTLAMSDECKQAYGIFDDAAYFSGKMNVKPGDGKEVTKTNVNVEAFNEWYYRSYDDEWMAVLE KYTKFKGVDDDSVIGISLLAFIETSGLVEFYKSYIDFLTDFPKRTDTYLVSGRVEAAKKKIDDAYKELVGHCNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17534; Mature: 17403
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIKSTLIFGVLLVVSFGTLAMSDECKQAYGIFDDAAYFSGKMNVKPGDGKEVTKTNVN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEECCCC VEAFNEWYYRSYDDEWMAVLEKYTKFKGVDDDSVIGISLLAFIETSGLVEFYKSYIDFLT HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DFPKRTDTYLVSGRVEAAKKKIDDAYKELVGHCNK CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLIKSTLIFGVLLVVSFGTLAMSDECKQAYGIFDDAAYFSGKMNVKPGDGKEVTKTNVN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEECCCC VEAFNEWYYRSYDDEWMAVLEKYTKFKGVDDDSVIGISLLAFIETSGLVEFYKSYIDFLT HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DFPKRTDTYLVSGRVEAAKKKIDDAYKELVGHCNK CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA