Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108812379
Identifier: 108812379
GI number: 108812379
Start: 2503999
End: 2504364
Strand: Reverse
Name: 108812379
Synonym: YPN_2218
Alternate gene names: NA
Gene position: 2504364-2503999 (Counterclockwise)
Preceding gene: 108812380
Following gene: 108812375
Centisome position: 55.23
GC content: 43.99
Gene sequence:
>366_bases GTGAGTAAAGAGTTATTCATGTCATTAAGCAGAAAAGCCGCCAAGGCACAAGACCATAAAATACGAGAACAACTCAAGCG TATGGATAACATCGCTGTTGCTCTATTTTTTGCTATTCCGCTGTGTCTGGCCCTTATTGGCGGGCGTCAGTTGGCGGTAT GGACACTACCTGGGTGGTATCTCTATAGCCTTGGATACATCATTAGTTTCCGGGTTGTTAGCAAAAAATTCACCACCAAA GAGGGGACGGAAATTGCCAGATTCACCAGAACGTATCCTTTCCACTCAGTCAGTTGGCTTATTTTTATTGGCTTTAGCCT ACTTTCTATAATCGTTATTATCGATGTTATGTCCGGAGCGCGCTGA
Upstream 100 bases:
>100_bases GGGGTTAATCAAATGGAACCCGCACCCTATCGATCTTTGTATTGAAGGTGCCTATGACGTTGAGACGGATAACGCAGAGC TACGCGCCCGTTGAGCCACG
Downstream 100 bases:
>100_bases TATTCCAGGATAATAAGATCTTCCAAGATAATAGAAGGGCTCTCTGCTTGGGTGGCAAAGAACCCATTAATGCATTAGCT TTTCTTAACAAATTCAGACT
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSKELFMSLSRKAAKAQDHKIREQLKRMDNIAVALFFAIPLCLALIGGRQLAVWTLPGWYLYSLGYIISFRVVSKKFTTK EGTEIARFTRTYPFHSVSWLIFIGFSLLSIIVIIDVMSGAR
Sequences:
>Translated_121_residues MSKELFMSLSRKAAKAQDHKIREQLKRMDNIAVALFFAIPLCLALIGGRQLAVWTLPGWYLYSLGYIISFRVVSKKFTTK EGTEIARFTRTYPFHSVSWLIFIGFSLLSIIVIIDVMSGAR >Mature_120_residues SKELFMSLSRKAAKAQDHKIREQLKRMDNIAVALFFAIPLCLALIGGRQLAVWTLPGWYLYSLGYIISFRVVSKKFTTKE GTEIARFTRTYPFHSVSWLIFIGFSLLSIIVIIDVMSGAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13807; Mature: 13675
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKELFMSLSRKAAKAQDHKIREQLKRMDNIAVALFFAIPLCLALIGGRQLAVWTLPGWY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH LYSLGYIISFRVVSKKFTTKEGTEIARFTRTYPFHSVSWLIFIGFSLLSIIVIIDVMSGA HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC R C >Mature Secondary Structure SKELFMSLSRKAAKAQDHKIREQLKRMDNIAVALFFAIPLCLALIGGRQLAVWTLPGWY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH LYSLGYIISFRVVSKKFTTKEGTEIARFTRTYPFHSVSWLIFIGFSLLSIIVIIDVMSGA HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA