Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108812299
Identifier: 108812299
GI number: 108812299
Start: 2415465
End: 2416655
Strand: Reverse
Name: 108812299
Synonym: YPN_2137
Alternate gene names: NA
Gene position: 2416655-2415465 (Counterclockwise)
Preceding gene: 108812300
Following gene: 108812294
Centisome position: 53.29
GC content: 35.68
Gene sequence:
>1191_bases ATGTGGGTTTTACCTATAAATTCTAATCCGACTGTTTTACATCCACCAATGGTGGATAGAGTTTATATCGATCGACAGAT CGATGAATTGGAACTTTATTTTTGTCCTGATACCGGAAAATGTAAAAAATTGACTACTGAAATGAGAGTCCGCAATGAAA TATATAAAAATCTGGATTATTTTTATTACTTTTTGGAAAAATCATACACTAGTGTCGCGCTGAGTTTGCTGATTGTAGAA CAGGCGTGGACAAATACACATCAACCCGTTTCACGTGGAAACATCAAACCAGAATATAGGCTTGATGACTACCGTAGAGA ATCGCTTTGTGAATTTGCTATCAGAGAGATACTGAAAACAGTAGATGAAGCAATAATATCGCAACCCAGTACAACCGATA GTTTTACTAAAAAAAAGAACAAAAAGGCATATGAAGATATTATCTCAATGGTTTCGTATTTAGTAGGGTTGACTAAAGAT AAAATACAGGGAGCAAAGCAACGCTATGGTTCAGACCCTATAACGCAAGTTTTATTTCAGGAATTTAACAAAAGAAATAT ATTTCATGACTATAGCGGCAATGAACAAGATGTATTAAAAGATGCTATGAATGGGATCGTTTATTCATGTTATAAATTCT ATAGTGAGAAAGAAAAATTACCTAGTGTAGACGTAATAAAAAAAATCATGAAAGAGGTGCCGCAGAGTATTAATTATCCG GATTCTGAGACTGCCGCCTATCGCCTTATCTCTAAAGCTATTATTGACCCTATGATTATAGATATTAATTATGAAAAACA TTGTCATCTTTCTCATTTAAATGCGTTGGCCAGAACTCTAATTGCAAAAGATATTCCTATTACCCATAACCGAAAATATA AACATTATCTTACTGATAATTTAAATAATAAATTCATCCGCTTATTCTTATTGGATAAGACCTTCGATATCCGCAAGAGT GAACTTTATCAGCGAGTCGAGCAACATTTACGGGAGATCAATGAAAACATCTCTGCGGATGATATTCTCCGGTGCTGCAA AGATTATTATGAATTTGCCCGTGAAAAGTATGCGCTGAAAATACCTTCTTTGGCTGAAGTTGAGTTTACGGAACAACTCA CGCGCAGCGGCCATATCTCAGCAGCAATAGAACATCGGCGTCATGGTACGTATCTGCCCCGAACAGTATGA
Upstream 100 bases:
>100_bases AGATTGGGGTTAACCATGGATATCTGTCAGTAGGCTGGGGAGTTAGAATATTTAATTGACTGTTCAGCCTCTCGCTTTAT CTGATTTAGGGATCATCGTC
Downstream 100 bases:
>100_bases TCGGTGACTTAAGTTGTGTTAATGAAGAATAGCGGGTTGTGTCTGACGGCGAGACGGAGCCAATAAGGGGTTATTGGCAA GGTGCCCACGACGGAGAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MWVLPINSNPTVLHPPMVDRVYIDRQIDELELYFCPDTGKCKKLTTEMRVRNEIYKNLDYFYYFLEKSYTSVALSLLIVE QAWTNTHQPVSRGNIKPEYRLDDYRRESLCEFAIREILKTVDEAIISQPSTTDSFTKKKNKKAYEDIISMVSYLVGLTKD KIQGAKQRYGSDPITQVLFQEFNKRNIFHDYSGNEQDVLKDAMNGIVYSCYKFYSEKEKLPSVDVIKKIMKEVPQSINYP DSETAAYRLISKAIIDPMIIDINYEKHCHLSHLNALARTLIAKDIPITHNRKYKHYLTDNLNNKFIRLFLLDKTFDIRKS ELYQRVEQHLREINENISADDILRCCKDYYEFAREKYALKIPSLAEVEFTEQLTRSGHISAAIEHRRHGTYLPRTV
Sequences:
>Translated_396_residues MWVLPINSNPTVLHPPMVDRVYIDRQIDELELYFCPDTGKCKKLTTEMRVRNEIYKNLDYFYYFLEKSYTSVALSLLIVE QAWTNTHQPVSRGNIKPEYRLDDYRRESLCEFAIREILKTVDEAIISQPSTTDSFTKKKNKKAYEDIISMVSYLVGLTKD KIQGAKQRYGSDPITQVLFQEFNKRNIFHDYSGNEQDVLKDAMNGIVYSCYKFYSEKEKLPSVDVIKKIMKEVPQSINYP DSETAAYRLISKAIIDPMIIDINYEKHCHLSHLNALARTLIAKDIPITHNRKYKHYLTDNLNNKFIRLFLLDKTFDIRKS ELYQRVEQHLREINENISADDILRCCKDYYEFAREKYALKIPSLAEVEFTEQLTRSGHISAAIEHRRHGTYLPRTV >Mature_396_residues MWVLPINSNPTVLHPPMVDRVYIDRQIDELELYFCPDTGKCKKLTTEMRVRNEIYKNLDYFYYFLEKSYTSVALSLLIVE QAWTNTHQPVSRGNIKPEYRLDDYRRESLCEFAIREILKTVDEAIISQPSTTDSFTKKKNKKAYEDIISMVSYLVGLTKD KIQGAKQRYGSDPITQVLFQEFNKRNIFHDYSGNEQDVLKDAMNGIVYSCYKFYSEKEKLPSVDVIKKIMKEVPQSINYP DSETAAYRLISKAIIDPMIIDINYEKHCHLSHLNALARTLIAKDIPITHNRKYKHYLTDNLNNKFIRLFLLDKTFDIRKS ELYQRVEQHLREINENISADDILRCCKDYYEFAREKYALKIPSLAEVEFTEQLTRSGHISAAIEHRRHGTYLPRTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46607; Mature: 46607
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWVLPINSNPTVLHPPMVDRVYIDRQIDELELYFCPDTGKCKKLTTEMRVRNEIYKNLDY CEEEEECCCCCEECCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH FYYFLEKSYTSVALSLLIVEQAWTNTHQPVSRGNIKPEYRLDDYRRESLCEFAIREILKT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VDEAIISQPSTTDSFTKKKNKKAYEDIISMVSYLVGLTKDKIQGAKQRYGSDPITQVLFQ HHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH EFNKRNIFHDYSGNEQDVLKDAMNGIVYSCYKFYSEKEKLPSVDVIKKIMKEVPQSINYP HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DSETAAYRLISKAIIDPMIIDINYEKHCHLSHLNALARTLIAKDIPITHNRKYKHYLTDN CCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC LNNKFIRLFLLDKTFDIRKSELYQRVEQHLREINENISADDILRCCKDYYEFAREKYALK CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEE IPSLAEVEFTEQLTRSGHISAAIEHRRHGTYLPRTV CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MWVLPINSNPTVLHPPMVDRVYIDRQIDELELYFCPDTGKCKKLTTEMRVRNEIYKNLDY CEEEEECCCCCEECCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH FYYFLEKSYTSVALSLLIVEQAWTNTHQPVSRGNIKPEYRLDDYRRESLCEFAIREILKT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VDEAIISQPSTTDSFTKKKNKKAYEDIISMVSYLVGLTKDKIQGAKQRYGSDPITQVLFQ HHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH EFNKRNIFHDYSGNEQDVLKDAMNGIVYSCYKFYSEKEKLPSVDVIKKIMKEVPQSINYP HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DSETAAYRLISKAIIDPMIIDINYEKHCHLSHLNALARTLIAKDIPITHNRKYKHYLTDN CCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC LNNKFIRLFLLDKTFDIRKSELYQRVEQHLREINENISADDILRCCKDYYEFAREKYALK CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEE IPSLAEVEFTEQLTRSGHISAAIEHRRHGTYLPRTV CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA