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The map label for this gene is lcrS [H]

Identifier: 108811288

GI number: 108811288

Start: 1294334

End: 1294597

Strand: Reverse

Name: lcrS [H]

Synonym: YPN_1125

Alternate gene names: 108811288

Gene position: 1294597-1294334 (Counterclockwise)

Preceding gene: 108811289

Following gene: 108811287

Centisome position: 28.55

GC content: 45.08

Gene sequence:

>264_bases
ATGAAGAAACGTTTTTCCGACGAACAGATCATCAATATTCTCCGCGAGGCTGAAGCCGGAGTTTCAGCCCGTGAACTCTG
CCGTAAGCACGCCATCTCTGAAGCCAGCTATTATAACTGGAAGGCAAAATATGGCGGCATGGAAGCGAGTGATATCAAAA
AGATAAAAGATCTTGAGGACGAAAACCGTCGTCTGAAACAGATGTTTGCCAACCTGAGCCTGGAGTGTCGGGCATTGAAA
GATGTTATCGAAAAAAAGCTTTAA

Upstream 100 bases:

>100_bases
ACCCATCAAAGCACGGGGAGCATTAGAGACTGACCTGCTCCCCATTGAATAACACACTCCGATGTTAGTAATGTCTTCAT
CAGCAACATGAGGACACCCC

Downstream 100 bases:

>100_bases
AACCAGCGATAAAGCGTGAGCTCGTCAATTACCTGACCGCGCAATTTGCGATCCTACGGCTCCAACGAGATCATTTGTTA
AAATGACCCAAACAGAAGTT

Product: IS1400 transposase A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLEDENRRLKQMFANLSLECRALK
DVIEKKL

Sequences:

>Translated_87_residues
MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLEDENRRLKQMFANLSLECRALK
DVIEKKL
>Mature_87_residues
MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLEDENRRLKQMFANLSLECRALK
DVIEKKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 8 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002514 [H]

Pfam domain/function: PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 10165; Mature: 10165

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLED
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHCCCH
ENRRLKQMFANLSLECRALKDVIEKKL
HHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKKRFSDEQIINILREAEAGVSARELCRKHAISEASYYNWKAKYGGMEASDIKKIKDLED
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHCCCH
ENRRLKQMFANLSLECRALKDVIEKKL
HHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]