Click here to switch to the map view.

The map label for this gene is intB [H]

Identifier: 108811287

GI number: 108811287

Start: 1294066

End: 1294251

Strand: Reverse

Name: intB [H]

Synonym: YPN_1124

Alternate gene names: 108811287

Gene position: 1294251-1294066 (Counterclockwise)

Preceding gene: 108811288

Following gene: 108811286

Centisome position: 28.54

GC content: 43.01

Gene sequence:

>186_bases
ATGACCCAAACAGAAGTTTATGGTCTTGGTTTCCGTTTTAAGGCTTGTAGCGCATTGCTTGAGTCAGGTTTGTGGTCAAA
AGACGATGTAGAATGCCAGATGAGTCATCAGGAGCGAAATACCGTTCGTTCGTCTTCTATCCATAAGGCCGAACATATAG
ATAAACGCAAGCTAATGGTTCAGTAG

Upstream 100 bases:

>100_bases
ATCGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTGAGCTCGTCAATTACCTGACCGCGCAATTTGCGATCCTACGGCTC
CAACGAGATCATTTGTTAAA

Downstream 100 bases:

>100_bases
TGGTCAATTACCTTGGTGCCAACCGTGAAGGGATGGTTAGGCTGTTTGATTTTGCCAAGAAAAATAACCTATTAAAAATC
ACCGATGGCTGACTATTTTG

Product: integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 61; Mature: 60

Protein sequence:

>61_residues
MTQTEVYGLGFRFKACSALLESGLWSKDDVECQMSHQERNTVRSSSIHKAEHIDKRKLMVQ

Sequences:

>Translated_61_residues
MTQTEVYGLGFRFKACSALLESGLWSKDDVECQMSHQERNTVRSSSIHKAEHIDKRKLMVQ
>Mature_60_residues
TQTEVYGLGFRFKACSALLESGLWSKDDVECQMSHQERNTVRSSSIHKAEHIDKRKLMVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 7042; Mature: 6911

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTEVYGLGFRFKACSALLESGLWSKDDVECQMSHQERNTVRSSSIHKAEHIDKRKLMV
CCCCCEECCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCCCHHHHHCCCCCCCC
Q
C
>Mature Secondary Structure 
TQTEVYGLGFRFKACSALLESGLWSKDDVECQMSHQERNTVRSSSIHKAEHIDKRKLMV
CCCCEECCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCCCHHHHHCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]