| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108757959
Identifier: 108757959
GI number: 108757959
Start: 5946330
End: 5949200
Strand: Direct
Name: 108757959
Synonym: MXAN_4746
Alternate gene names: NA
Gene position: 5946330-5949200 (Clockwise)
Preceding gene: 108757146
Following gene: 108763646
Centisome position: 65.06
GC content: 66.49
Gene sequence:
>2871_bases GTGAGCGGGCGCACGGTGAAGGGCCGAGTCGCGGACCGGCTCACCAATGAGGGACTGCCCCTGGTGCGTGTCATCATCAA GGGCACCACCCAGGGCGTGGAGACGGAGCTGGACGGCACCTTCACCCTGCCCAACGTGCCGACCCGATCGGTGACGCTGC TCTTCTCCAGTCAGGACTACGGCGAGCGCGAGGTGCTGATTGGCGCCAACCAGCGCACCGTCGAAGTCGCGATGGAGAAC ATCTTCGCGGAGGAGATGGTGGTGGTGGGGCGCGCCAGTGAGGTGGCGCGTAAGAACCTGGCCAACTCGGTGGCATCGGT GAACTCCGAGGAGATCAACCGCGCGCCTGCCCAGACGGTGGACCAGGCGCTCCAGGGCAAGGTCGCCGGCGCCAACATCC AGAGCAACGGCGGCGCGCCCGGTGGCGGTCTCCAGCTCCGGCTGCGCGGAGTGTCCACCATCAACGGCTCCTCCGCCCCG CTCTACGTCATCGACGGCGTGCTCGTCAGCGACGTGGCCATCGCCTCCGGTGTGTTCGCCATCACCGAGTCCGTGGCCGG CGCCAACGCGAACCCCACCCAGGACAACCAGGTCAATCGCATCGCGGACATCAACCCCAACGACATCGAGAGCATCGAGG TCCTCAAGGGCGCGTCCGCCGCCGCCATCTACGGCTCCAAGGCCGCCAACGGCGTGGTCATCATCAACACCAAGCGGGGC CGCTCCAGCGAGCCGCAGTTCGAGGTGACCCAGCGCCTGGGCATGTACACGCTGGCCAACAAGCTTGGCACCCGCCGCTT CAACAGCGTGGAGGAGGTGCGCGACACCTTCGGAGAGGCCGCGGTCCAGTACTACGAGCAGGGGCGAAGGTTCGACCACG AGGCCACCCTGGCCGGCCGCCGCGACCTGTCCTCGGAGACGCTGGCCAGCGTCAGCGGCGTGACGGGCAACACGAAGTAC TTCGCCTCGGCGATGATCAAGAACGACGAAGGCATCATCGCCAACACCGGCTACGAGAAGCAGTCGTTCCGGCTGAACCT GGGCCAGAAGCTGGGTGACGCCGTGGAGGTCAACGTCGCCACCAACCTGGTTCACTCCCTGGGTCAGCGCGGTCTGACGA ACAACGACAACGCGAGCATCAGCAACTACATGGTGCTGCCGCGCGCGCCGGAGTTCCTCCCACTGGAGGCCAACTCGGAC GGCGTGTACCCGCAAAACCCCTTCCTCTCCAACCGCGCCAACCCATTGCAGACGGCCGCGCTGGTGAAGAACGACGAAAA CGTGTGGCGCTTCATCGGGTCCGGAGACCTGACGTGGCACCTGTGGAAGACGGAGGCCCACCACCTGCGCGTGCTGGCCA ACGCGGGCGTGGACCGGTTCCAGCAGGAGAACTCGCTCTTCTTCCCGCCCGAGCTCAACTTCGAGCCCATCGATGACGGC CTGCCAGGCTCGTCGCTCTTCGGCACCAGCCAGGTGCGCAACCTGAACTCCGGCCTGAACCTGGTGCACACCTACAAGCC CACGTCGGGCGGCATCGTGGCGACCACGTCCGGCGGTCTCCAGTTCGAAGAGCGCAACATCGATTCCATCTACATCGTCA GCAAGAACCTGAACGCCGGCCAGCAGAACGTGGACAGCGGCACGGTGGTCAACCTGCGGCAGAACCGCTCGCTGGTGAGA GACCGGGGCTACTACGTCCAGGAGGAGGTCCTCCTGCTGGACGAGCGCCTGACGCTGGTGGGCGCGCTGCGCGGCGAGCA GAGCAGCGCCAACGGCAACCCCAACGCGCTGTTCCTGTACCCGAAGCTGGCCTCCGCCTACCGGATTCCCTCGTTCCACC CGAAGGTGAACGAGTTCAAGGTCCGCGCGGCCTACGGAGAGACGGGCAACCTTCCGCTGTACGGCATGAAGTTCAACGGC CTGCGCGCCACCGGCAACATCGCCGGCAGCCCCGGCCTGGTGGGCACGGGCATCGCGGGTGACCGGAACATCAAGCCGGA GCGGCAGCGCGAGGTCGAAGCCGGCGTGGACGCCCTCCTGTTCGGCGGCGACGTGGTCGCGGAAGTGTCCATCTACCAGC GAAACATCAGCGACCTGCTACTGCAGCGCGCCCTGGCCCCGTCCGGTGGCTTCGCCACGCAGATCTTCAATGGCGGCTCG CTGCGCAACCGTGGCGTCGAGGCCATGGTCCAGGTAACGCCCGTGCGCGGCGGCTTCGAGTGGACCAGCGGCGCGACGTT CGCCCTCAACCGCAGCCGGGTGACGGACCTGCCTGTTCCCGCGTTCCTCGCCGGTGGGTTCGGCACTGCCCTGGGCGCCT TCCGCATCCAGGAAGGCGCGACGGCGACGCAGATTGTGGGCAACGACGGCGTCGACGAGAACGGCCGCCCGATTGTGCGG AAGCTTGGCGACACCGAGCCCACCTTCCGCATGTCCTTCACCAACAGCCTCAAGTACCGGGACTTCAGCCTGTCCTTCCT GTTCGACTGGCAGCAGGGCAGCGACATCATCAACCTGACGCGGTACATCTACGACGACGCCGGGACGTCACCGGACTTCA CGACGGGGGGCCGCGAGCGGCTCGTACGGCAACGTACGCACGCGAGCACGTACATCGAGGACGCCAGCTTCCTCAAGCTG CGTGAGGTGACCTTCATGTACCAGCTGCCCAAGGACTGGGTGTCCATGGTTCCAGCGGTGAAGTCCGCCCGGCTCAGCCT GAGCGGGCGCAACCTCATCACCTTGACTGGCTACTCCGGGTTGGATCCGGAGGTGAGCAACTTCGGCAACCAGGCCATCT CCCGCAACGTGGACGTGGCCCCCTTCCCTCCCAGCCGCAGCTTCTGGACCTCCCTCGACGTCGGGTTCTGA
Upstream 100 bases:
>100_bases CGAAAATATCGCGCCACCCGCAGCCGAAACACAGACACCGGCGGCACCCGCGCCAGGGGTTGCGCCGCAGCCAGCGCCCA CGGCACCCGCGCCCGCGCCG
Downstream 100 bases:
>100_bases GCCATGACCATCCAACTGACCAAGAAGGCATTCGTGGGGCTCTTCACCGTCCTGGGCCTGAGCGGCTGCGGGAGCCTGGA CGTCCCGGACCTGAACAACC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Outer Membrane Protein; NB-Dependent Receptor; Nb-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; SusC Protein; NB-Dependent Receptor Plug Domain Protein; Outer Membrane Protein Omp; NB-Linked Outer Membrane Protein; Receptor Antigen RagA; Outer Membrane Receptor RagA Protein; NB Dependent Receptor; NB Dependent Outer Membrane Exported Protein; Outer Membrane Receptor; NB Dependent/Ligand-Gated Channel; Outer Membrane Protein Probably; Surface Membrane Protein; NB-Dependent Receptor Domain-Containing Protein
Number of amino acids: Translated: 956; Mature: 955
Protein sequence:
>956_residues MSGRTVKGRVADRLTNEGLPLVRVIIKGTTQGVETELDGTFTLPNVPTRSVTLLFSSQDYGEREVLIGANQRTVEVAMEN IFAEEMVVVGRASEVARKNLANSVASVNSEEINRAPAQTVDQALQGKVAGANIQSNGGAPGGGLQLRLRGVSTINGSSAP LYVIDGVLVSDVAIASGVFAITESVAGANANPTQDNQVNRIADINPNDIESIEVLKGASAAAIYGSKAANGVVIINTKRG RSSEPQFEVTQRLGMYTLANKLGTRRFNSVEEVRDTFGEAAVQYYEQGRRFDHEATLAGRRDLSSETLASVSGVTGNTKY FASAMIKNDEGIIANTGYEKQSFRLNLGQKLGDAVEVNVATNLVHSLGQRGLTNNDNASISNYMVLPRAPEFLPLEANSD GVYPQNPFLSNRANPLQTAALVKNDENVWRFIGSGDLTWHLWKTEAHHLRVLANAGVDRFQQENSLFFPPELNFEPIDDG LPGSSLFGTSQVRNLNSGLNLVHTYKPTSGGIVATTSGGLQFEERNIDSIYIVSKNLNAGQQNVDSGTVVNLRQNRSLVR DRGYYVQEEVLLLDERLTLVGALRGEQSSANGNPNALFLYPKLASAYRIPSFHPKVNEFKVRAAYGETGNLPLYGMKFNG LRATGNIAGSPGLVGTGIAGDRNIKPERQREVEAGVDALLFGGDVVAEVSIYQRNISDLLLQRALAPSGGFATQIFNGGS LRNRGVEAMVQVTPVRGGFEWTSGATFALNRSRVTDLPVPAFLAGGFGTALGAFRIQEGATATQIVGNDGVDENGRPIVR KLGDTEPTFRMSFTNSLKYRDFSLSFLFDWQQGSDIINLTRYIYDDAGTSPDFTTGGRERLVRQRTHASTYIEDASFLKL REVTFMYQLPKDWVSMVPAVKSARLSLSGRNLITLTGYSGLDPEVSNFGNQAISRNVDVAPFPPSRSFWTSLDVGF
Sequences:
>Translated_956_residues MSGRTVKGRVADRLTNEGLPLVRVIIKGTTQGVETELDGTFTLPNVPTRSVTLLFSSQDYGEREVLIGANQRTVEVAMEN IFAEEMVVVGRASEVARKNLANSVASVNSEEINRAPAQTVDQALQGKVAGANIQSNGGAPGGGLQLRLRGVSTINGSSAP LYVIDGVLVSDVAIASGVFAITESVAGANANPTQDNQVNRIADINPNDIESIEVLKGASAAAIYGSKAANGVVIINTKRG RSSEPQFEVTQRLGMYTLANKLGTRRFNSVEEVRDTFGEAAVQYYEQGRRFDHEATLAGRRDLSSETLASVSGVTGNTKY FASAMIKNDEGIIANTGYEKQSFRLNLGQKLGDAVEVNVATNLVHSLGQRGLTNNDNASISNYMVLPRAPEFLPLEANSD GVYPQNPFLSNRANPLQTAALVKNDENVWRFIGSGDLTWHLWKTEAHHLRVLANAGVDRFQQENSLFFPPELNFEPIDDG LPGSSLFGTSQVRNLNSGLNLVHTYKPTSGGIVATTSGGLQFEERNIDSIYIVSKNLNAGQQNVDSGTVVNLRQNRSLVR DRGYYVQEEVLLLDERLTLVGALRGEQSSANGNPNALFLYPKLASAYRIPSFHPKVNEFKVRAAYGETGNLPLYGMKFNG LRATGNIAGSPGLVGTGIAGDRNIKPERQREVEAGVDALLFGGDVVAEVSIYQRNISDLLLQRALAPSGGFATQIFNGGS LRNRGVEAMVQVTPVRGGFEWTSGATFALNRSRVTDLPVPAFLAGGFGTALGAFRIQEGATATQIVGNDGVDENGRPIVR KLGDTEPTFRMSFTNSLKYRDFSLSFLFDWQQGSDIINLTRYIYDDAGTSPDFTTGGRERLVRQRTHASTYIEDASFLKL REVTFMYQLPKDWVSMVPAVKSARLSLSGRNLITLTGYSGLDPEVSNFGNQAISRNVDVAPFPPSRSFWTSLDVGF >Mature_955_residues SGRTVKGRVADRLTNEGLPLVRVIIKGTTQGVETELDGTFTLPNVPTRSVTLLFSSQDYGEREVLIGANQRTVEVAMENI FAEEMVVVGRASEVARKNLANSVASVNSEEINRAPAQTVDQALQGKVAGANIQSNGGAPGGGLQLRLRGVSTINGSSAPL YVIDGVLVSDVAIASGVFAITESVAGANANPTQDNQVNRIADINPNDIESIEVLKGASAAAIYGSKAANGVVIINTKRGR SSEPQFEVTQRLGMYTLANKLGTRRFNSVEEVRDTFGEAAVQYYEQGRRFDHEATLAGRRDLSSETLASVSGVTGNTKYF ASAMIKNDEGIIANTGYEKQSFRLNLGQKLGDAVEVNVATNLVHSLGQRGLTNNDNASISNYMVLPRAPEFLPLEANSDG VYPQNPFLSNRANPLQTAALVKNDENVWRFIGSGDLTWHLWKTEAHHLRVLANAGVDRFQQENSLFFPPELNFEPIDDGL PGSSLFGTSQVRNLNSGLNLVHTYKPTSGGIVATTSGGLQFEERNIDSIYIVSKNLNAGQQNVDSGTVVNLRQNRSLVRD RGYYVQEEVLLLDERLTLVGALRGEQSSANGNPNALFLYPKLASAYRIPSFHPKVNEFKVRAAYGETGNLPLYGMKFNGL RATGNIAGSPGLVGTGIAGDRNIKPERQREVEAGVDALLFGGDVVAEVSIYQRNISDLLLQRALAPSGGFATQIFNGGSL RNRGVEAMVQVTPVRGGFEWTSGATFALNRSRVTDLPVPAFLAGGFGTALGAFRIQEGATATQIVGNDGVDENGRPIVRK LGDTEPTFRMSFTNSLKYRDFSLSFLFDWQQGSDIINLTRYIYDDAGTSPDFTTGGRERLVRQRTHASTYIEDASFLKLR EVTFMYQLPKDWVSMVPAVKSARLSLSGRNLITLTGYSGLDPEVSNFGNQAISRNVDVAPFPPSRSFWTSLDVGF
Specific function: Unknown
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103455; Mature: 103324
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRTVKGRVADRLTNEGLPLVRVIIKGTTQGVETELDGTFTLPNVPTRSVTLLFSSQDY CCCCEECCHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEECCCCCCCEEEEEEECCCC GEREVLIGANQRTVEVAMENIFAEEMVVVGRASEVARKNLANSVASVNSEEINRAPAQTV CCEEEEEECCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCHHHHHCCCHHHH DQALQGKVAGANIQSNGGAPGGGLQLRLRGVSTINGSSAPLYVIDGVLVSDVAIASGVFA HHHHCCCEECCCEECCCCCCCCCEEEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHH ITESVAGANANPTQDNQVNRIADINPNDIESIEVLKGASAAAIYGSKAANGVVIINTKRG HHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCCCCCEEEEECCCC RSSEPQFEVTQRLGMYTLANKLGTRRFNSVEEVRDTFGEAAVQYYEQGRRFDHEATLAGR CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC RDLSSETLASVSGVTGNTKYFASAMIKNDEGIIANTGYEKQSFRLNLGQKLGDAVEVNVA CCCCHHHHHHHCCCCCCHHEEEEEEEECCCCEEEECCCCCCEEEEECCHHCCCEEEEHHH TNLVHSLGQRGLTNNDNASISNYMVLPRAPEFLPLEANSDGVYPQNPFLSNRANPLQTAA HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH LVKNDENVWRFIGSGDLTWHLWKTEAHHLRVLANAGVDRFQQENSLFFPPELNFEPIDDG EEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCEECCCCCCCCCCCCC LPGSSLFGTSQVRNLNSGLNLVHTYKPTSGGIVATTSGGLQFEERNIDSIYIVSKNLNAG CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEEECCCEEEECCCCCEEEEEECCCCCC QQNVDSGTVVNLRQNRSLVRDRGYYVQEEVLLLDERLTLVGALRGEQSSANGNPNALFLY CCCCCCCCEEEEHHCCHHHHHCCCEEEHHHHHHHHHEEEEHHHCCCCCCCCCCCCEEEEE PKLASAYRIPSFHPKVNEFKVRAAYGETGNLPLYGMKFNGLRATGNIAGSPGLVGTGIAG ECCHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCCEEECCCC DRNIKPERQREVEAGVDALLFGGDVVAEVSIYQRNISDLLLQRALAPSGGFATQIFNGGS CCCCCCHHHHHHHHCCCEEEECCCEEEEHHHHHHCHHHHHHHHHCCCCCCCEEEEECCCC LRNRGVEAMVQVTPVRGGFEWTSGATFALNRSRVTDLPVPAFLAGGFGTALGAFRIQEGA CCCCCCEEEEEEEECCCCCEECCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHEEECCCC TATQIVGNDGVDENGRPIVRKLGDTEPTFRMSFTNSLKYRDFSLSFLFDWQQGSDIINLT CEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHH RYIYDDAGTSPDFTTGGRERLVRQRTHASTYIEDASFLKLREVTFMYQLPKDWVSMVPAV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCHHHHHHHHHH KSARLSLSGRNLITLTGYSGLDPEVSNFGNQAISRNVDVAPFPPSRSFWTSLDVGF HHHEEEECCCEEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCEECCCC >Mature Secondary Structure SGRTVKGRVADRLTNEGLPLVRVIIKGTTQGVETELDGTFTLPNVPTRSVTLLFSSQDY CCCEECCHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEECCCCCCCEEEEEEECCCC GEREVLIGANQRTVEVAMENIFAEEMVVVGRASEVARKNLANSVASVNSEEINRAPAQTV CCEEEEEECCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCHHHHHCCCHHHH DQALQGKVAGANIQSNGGAPGGGLQLRLRGVSTINGSSAPLYVIDGVLVSDVAIASGVFA HHHHCCCEECCCEECCCCCCCCCEEEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHH ITESVAGANANPTQDNQVNRIADINPNDIESIEVLKGASAAAIYGSKAANGVVIINTKRG HHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCCCCCEEEEECCCC RSSEPQFEVTQRLGMYTLANKLGTRRFNSVEEVRDTFGEAAVQYYEQGRRFDHEATLAGR CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC RDLSSETLASVSGVTGNTKYFASAMIKNDEGIIANTGYEKQSFRLNLGQKLGDAVEVNVA CCCCHHHHHHHCCCCCCHHEEEEEEEECCCCEEEECCCCCCEEEEECCHHCCCEEEEHHH TNLVHSLGQRGLTNNDNASISNYMVLPRAPEFLPLEANSDGVYPQNPFLSNRANPLQTAA HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH LVKNDENVWRFIGSGDLTWHLWKTEAHHLRVLANAGVDRFQQENSLFFPPELNFEPIDDG EEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCEECCCCCCCCCCCCC LPGSSLFGTSQVRNLNSGLNLVHTYKPTSGGIVATTSGGLQFEERNIDSIYIVSKNLNAG CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEEECCCEEEECCCCCEEEEEECCCCCC QQNVDSGTVVNLRQNRSLVRDRGYYVQEEVLLLDERLTLVGALRGEQSSANGNPNALFLY CCCCCCCCEEEEHHCCHHHHHCCCEEEHHHHHHHHHEEEEHHHCCCCCCCCCCCCEEEEE PKLASAYRIPSFHPKVNEFKVRAAYGETGNLPLYGMKFNGLRATGNIAGSPGLVGTGIAG ECCHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCCEEECCCC DRNIKPERQREVEAGVDALLFGGDVVAEVSIYQRNISDLLLQRALAPSGGFATQIFNGGS CCCCCCHHHHHHHHCCCEEEECCCEEEEHHHHHHCHHHHHHHHHCCCCCCCEEEEECCCC LRNRGVEAMVQVTPVRGGFEWTSGATFALNRSRVTDLPVPAFLAGGFGTALGAFRIQEGA CCCCCCEEEEEEEECCCCCEECCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHEEECCCC TATQIVGNDGVDENGRPIVRKLGDTEPTFRMSFTNSLKYRDFSLSFLFDWQQGSDIINLT CEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHH RYIYDDAGTSPDFTTGGRERLVRQRTHASTYIEDASFLKLREVTFMYQLPKDWVSMVPAV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCHHHHHHHHHH KSARLSLSGRNLITLTGYSGLDPEVSNFGNQAISRNVDVAPFPPSRSFWTSLDVGF HHHEEEECCCEEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA