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The map label for this gene is rpsT

Identifier: 108757146

GI number: 108757146

Start: 5941802

End: 5942077

Strand: Direct

Name: rpsT

Synonym: MXAN_4742

Alternate gene names: 108757146

Gene position: 5941802-5942077 (Clockwise)

Preceding gene: 108762913

Following gene: 108757959

Centisome position: 65.01

GC content: 69.57

Gene sequence:

>276_bases
TTGGCCAACACCAAGTCCGCAGAGAAGCGTCACCGTCAGTCCCTGAAGCGCCGTGCGCGCAACGTCACCGTGCGCGGTGA
GGTGAAGACCGCCGTCAAGTCCGCCCGCGAGGCGCTCGGCAGCAAGGATGGGGCGAAGATGACGGACGCCATCAAGTCGG
CCGCCAAGGCGCTGAGCAAGGCCGCCACCAAGGGCGTGCTGCACAAGCGCACCGCTTCCCGCCGCATCTCGCGTCTCGCG
AAGGCCGCCACCAAGGCCGCCCGCGCGCAGGCCTAG

Upstream 100 bases:

>100_bases
GGAAATCCCGGCTGGAGGCCCACACCCGCCTTGACGCCTGCGAGGCGTCGCAGTAAGGACGGCCCCTCTTTTAGCCTGCC
ATTACCGCTGGAGATTTCTC

Downstream 100 bases:

>100_bases
TCGAAGCCTCGGGGCCACCTCGCGTGGCCCTGCTTCATTCGTGCAGGCTGCCGGGAGGAGGCTCTTGCCTCCTCACCAGG
CACCCGCGAGCCGGTCGTAG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MANTKSAEKRHRQSLKRRARNVTVRGEVKTAVKSAREALGSKDGAKMTDAIKSAAKALSKAATKGVLHKRTASRRISRLA
KAATKAARAQA

Sequences:

>Translated_91_residues
MANTKSAEKRHRQSLKRRARNVTVRGEVKTAVKSAREALGSKDGAKMTDAIKSAAKALSKAATKGVLHKRTASRRISRLA
KAATKAARAQA
>Mature_90_residues
ANTKSAEKRHRQSLKRRARNVTVRGEVKTAVKSAREALGSKDGAKMTDAIKSAAKALSKAATKGVLHKRTASRRISRLAK
AATKAARAQA

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_MYXXD (Q1D369)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_632904.1
- ProteinModelPortal:   Q1D369
- SMR:   Q1D369
- STRING:   Q1D369
- GeneID:   4105292
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_4742
- TIGR:   MXAN_4742
- eggNOG:   NOG148439
- HOGENOM:   HBG734145
- OMA:   KVIRRRT
- ProtClustDB:   PRK00239
- BioCyc:   MXAN246197:MXAN_4742-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231
- TIGRFAMs:   TIGR00029

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 9738; Mature: 9607

Theoretical pI: Translated: 12.54; Mature: 12.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTKSAEKRHRQSLKRRARNVTVRGEVKTAVKSAREALGSKDGAKMTDAIKSAAKALSK
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AATKGVLHKRTASRRISRLAKAATKAARAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANTKSAEKRHRQSLKRRARNVTVRGEVKTAVKSAREALGSKDGAKMTDAIKSAAKALSK
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AATKGVLHKRTASRRISRLAKAATKAARAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA