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The map label for this gene is gatC

Identifier: 108563381

GI number: 108563381

Start: 1003175

End: 1003456

Strand: Direct

Name: gatC

Synonym: HPAG1_0956

Alternate gene names: 108563381

Gene position: 1003175-1003456 (Clockwise)

Preceding gene: 108563380

Following gene: 108563383

Centisome position: 62.84

GC content: 39.01

Gene sequence:

>282_bases
ATGCAAATTGATGACGCATTATTGCAACGCTTGGAAAAATTGAGCATGTTAGAGATTAAAGACGAGCATAAAGAGAGCGT
TAAAGGCCATTTAGCGGAGATTTTAGGCTTTGTAGAAAACATCTTCGCTTTAGAAACTAGCGCGCTAAAAACAGATACAG
AACTATGCACCCCTTTAAGAGAAGACGAGCCTAAAAGCCAACCTAACACCGCTAAAGAGATTTTAAGCCAAAACAAACAC
AGCCAGGATCATTACTTCGTTGTGCCTAAAATCATTGAATAG

Upstream 100 bases:

>100_bases
ACGGAGCCTTAAACAATATCGCTAGCAGCGTGTTAAAACTCATGGGCCTTAAAGCCCCAGCAACGATGGACGAACCCCTA
TTTTAAACTAAAGGAAAAGA

Downstream 100 bases:

>100_bases
GTTTTATTGAATAGGTTTCATATCAAGTTAAAAACTTGATTTTTGAAATCAAATAGACAGAAAAAAGCTATCGCTTGATC
CAATTCAAGCTTTTTACTAT

Product: aspartyl/glutamyl-tRNA amidotransferase subunit C

Products: NA

Alternate protein names: Asp/Glu-ADT subunit C

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEILGFVENIFALETSALKTDTELCTPLREDEPKSQPNTAKEILSQNKH
SQDHYFVVPKIIE

Sequences:

>Translated_93_residues
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEILGFVENIFALETSALKTDTELCTPLREDEPKSQPNTAKEILSQNKH
SQDHYFVVPKIIE
>Mature_93_residues
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEILGFVENIFALETSALKTDTELCTPLREDEPKSQPNTAKEILSQNKH
SQDHYFVVPKIIE

Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take

COG id: COG0721

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gatC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GATC_HELPH (Q1CSP9)

Other databases:

- EMBL:   CP000241
- RefSeq:   YP_627697.1
- ProteinModelPortal:   Q1CSP9
- SMR:   Q1CSP9
- STRING:   Q1CSP9
- GeneID:   4099316
- GenomeReviews:   CP000241_GR
- KEGG:   hpa:HPAG1_0956
- eggNOG:   COG0721
- HOGENOM:   HBG586403
- OMA:   LGFVENI
- ProtClustDB:   PRK00034
- BioCyc:   HPYL357544:HPAG1_0956-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00122
- InterPro:   IPR003837
- TIGRFAMs:   TIGR00135

Pfam domain/function: PF02686 Glu-tRNAGln

EC number: 6.3.5.-

Molecular weight: Translated: 10658; Mature: 10658

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEILGFVENIFALETSALKTDTELCTPLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
EDEPKSQPNTAKEILSQNKHSQDHYFVVPKIIE
CCCCCCCCCHHHHHHHCCCCCCCCEEECCEECC
>Mature Secondary Structure
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEILGFVENIFALETSALKTDTELCTPLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
EDEPKSQPNTAKEILSQNKHSQDHYFVVPKIIE
CCCCCCCCCHHHHHHHCCCCCCCCEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA