Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is gpmI [H]

Identifier: 108563380

GI number: 108563380

Start: 1001685

End: 1003160

Strand: Direct

Name: gpmI [H]

Synonym: HPAG1_0955

Alternate gene names: 108563380

Gene position: 1001685-1003160 (Clockwise)

Preceding gene: 108563379

Following gene: 108563381

Centisome position: 62.75

GC content: 42.07

Gene sequence:

>1476_bases
ATGGCGCAAAAAACTCTTTTGATTATCACTGATGGCATTGGGTATCGTAAAGATAGCGATCATAACGCATTCTTTCATGC
TAAAAAACCCACTTATGATTTGATGTTTAAAACCTTGCCTTATAGCCTGATTGATACGCATGGCTTGAGCGTGGGCTTAC
CTGAAGGGCAAATGGGGAATTCTGAAGTGGGGCATATGTGCATTGGGGCTGGTAGGGTGCTCTATCAGGATTTAGTCAAA
ATTTCTTTAAGCCTTCAAAACGATGACTTAAAAAACAACCCCGCTTTTTTAAACACGATCCACAAAAGCCCTGTGGTGCA
TCTTATGGGTTTGATGAGCGATGGAGGCGTGCATTCACACATTGAGCATTTTATCGCTCTGGCTTTAGAGTGTGAAAAAT
CCCACAAAAAAGTCTGTCTGCATTTAATCACCGATGGGCGCGATGTCGCTCCTAAAAGTGCTTTAACTTATTTAAAACAA
ATGCAAAATATCTGCAATGAAAACATTCAAATCGCTACCATAAGCGGTCGTTTTTATGCCATGGATAGGGATAAGCGCTT
TGAAAGGATTGAGCTTGCATATCATAGCTTAATGGGGCTTAATCACACGCCTTTAAGCCCTAGCGAATATATCCAAAGCC
AATACGATAAAAATATCACCGATGAATTTATCACGCCCGCTTGTTTTAAAAATTATTACGGCATGCAAGATGATGAAAGC
TTCATTTTTATCAATTTCAGGAATGATAGGGCTAGAGAAATCGTGAGCGCTTTAGGCCAAAAGGAATTCAGTGGCTTTAA
GCGCCAAGCTTTTAAAAAACTCCATATCGCTACCATGACGCCTTATGATAACACTTTCCCCTACCCTGTTTTATTCCCCA
AAGAAAGCGTTCAAAACACGCTCGCTGAAGTGGTCTCTCAACACAACCTGACCCAAAGCCATATCGCTGAAACTGAAAAA
TACGCGCATGTAACCTTTTTCATCAATGGCGGAGTGGAAACGCCTTTTAAAAATGAAAACCGGGTGCTTATCCCAAGCCC
AAAAGTTACCACTTATGATTTAAAGCCTGAAATGAGCGCTAAAGAAGTAACCCTTGCGGTGTTAGAGCAAATGAAACTAG
GCACGGATTTGATCATTGTGAATTTTGCTAATGGCGATATGGTGGGGCATACGGGGAATTTTGAAGCGAGTGTCAAAGCG
GTAGAAGCAGTGGATGCATGCTTAGGGGAAATCCTTTCACTGGCTAAAAAATTGGATTACGCCATGCTTTTAACCAGCGA
TCATGGGAATTGCGAGCACATGAAAGACGAAAACCAAAACCCCTTAACCAACCACACCGCCGGGAGCGTGTATTGCTTTG
TTTTAGGGGATGGAGTTAGATCCATTAAAAACGGAGCCTTAAACAATATCGCTAGCAGCGTGTTAAAACTCATGGGCCTT
AAAGCCCCAGCAACGATGGACGAACCCCTATTTTAA

Upstream 100 bases:

>100_bases
CAAAAAACAAGAAGTGTGCAAAAATTGCTCTCCAGGGCAAAGAAACGCGATTTTAGCTAACCGCATCACTCTCATGCAAG
AGCTTTAAAAAGTCCTAAAA

Downstream 100 bases:

>100_bases
ACTAAAGGAAAAGAATGCAAATTGATGACGCATTATTGCAACGCTTGGAAAAATTGAGCATGTTAGAGATTAAAGACGAG
CATAAAGAGAGCGTTAAAGG

Product: phosphoglyceromutase

Products: NA

Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVK
ISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ
MQNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES
FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK
YAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKA
VEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL
KAPATMDEPLF

Sequences:

>Translated_491_residues
MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVK
ISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ
MQNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES
FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK
YAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKA
VEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL
KAPATMDEPLF
>Mature_490_residues
AQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVKI
SLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQM
QNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDESF
IFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKY
AHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAV
EAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGLK
APATMDEPLF

Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]

COG id: COG0696

COG function: function code G; Phosphoglyceromutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]

Homologues:

Organism=Escherichia coli, GI1790041, Length=504, Percent_Identity=42.4603174603175, Blast_Score=405, Evalue=1e-114,
Organism=Caenorhabditis elegans, GI17507741, Length=505, Percent_Identity=41.980198019802, Blast_Score=386, Evalue=1e-107,
Organism=Caenorhabditis elegans, GI32564249, Length=505, Percent_Identity=41.980198019802, Blast_Score=385, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR011258
- InterPro:   IPR006124
- InterPro:   IPR005995 [H]

Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]

EC number: =5.4.2.1 [H]

Molecular weight: Translated: 54792; Mature: 54661

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGN
CCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCHHHHHCCCCEECCCCCCCCC
SEVGHMCIGAGRVLYQDLVKISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSH
CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHH
IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA
HHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
MDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES
ECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCC
FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNT
EEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEECCHHHHHHH
LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSA
HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCH
KEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDY
HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
AMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
KAPATMDEPLF
CCCCCCCCCCC
>Mature Secondary Structure 
AQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGN
CCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCHHHHHCCCCEECCCCCCCCC
SEVGHMCIGAGRVLYQDLVKISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSH
CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHH
IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA
HHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
MDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES
ECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCC
FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNT
EEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEECCHHHHHHH
LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSA
HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCH
KEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDY
HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
AMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
KAPATMDEPLF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA