Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
---|---|
Accession | NC_008086 |
Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is gpmI [H]
Identifier: 108563380
GI number: 108563380
Start: 1001685
End: 1003160
Strand: Direct
Name: gpmI [H]
Synonym: HPAG1_0955
Alternate gene names: 108563380
Gene position: 1001685-1003160 (Clockwise)
Preceding gene: 108563379
Following gene: 108563381
Centisome position: 62.75
GC content: 42.07
Gene sequence:
>1476_bases ATGGCGCAAAAAACTCTTTTGATTATCACTGATGGCATTGGGTATCGTAAAGATAGCGATCATAACGCATTCTTTCATGC TAAAAAACCCACTTATGATTTGATGTTTAAAACCTTGCCTTATAGCCTGATTGATACGCATGGCTTGAGCGTGGGCTTAC CTGAAGGGCAAATGGGGAATTCTGAAGTGGGGCATATGTGCATTGGGGCTGGTAGGGTGCTCTATCAGGATTTAGTCAAA ATTTCTTTAAGCCTTCAAAACGATGACTTAAAAAACAACCCCGCTTTTTTAAACACGATCCACAAAAGCCCTGTGGTGCA TCTTATGGGTTTGATGAGCGATGGAGGCGTGCATTCACACATTGAGCATTTTATCGCTCTGGCTTTAGAGTGTGAAAAAT CCCACAAAAAAGTCTGTCTGCATTTAATCACCGATGGGCGCGATGTCGCTCCTAAAAGTGCTTTAACTTATTTAAAACAA ATGCAAAATATCTGCAATGAAAACATTCAAATCGCTACCATAAGCGGTCGTTTTTATGCCATGGATAGGGATAAGCGCTT TGAAAGGATTGAGCTTGCATATCATAGCTTAATGGGGCTTAATCACACGCCTTTAAGCCCTAGCGAATATATCCAAAGCC AATACGATAAAAATATCACCGATGAATTTATCACGCCCGCTTGTTTTAAAAATTATTACGGCATGCAAGATGATGAAAGC TTCATTTTTATCAATTTCAGGAATGATAGGGCTAGAGAAATCGTGAGCGCTTTAGGCCAAAAGGAATTCAGTGGCTTTAA GCGCCAAGCTTTTAAAAAACTCCATATCGCTACCATGACGCCTTATGATAACACTTTCCCCTACCCTGTTTTATTCCCCA AAGAAAGCGTTCAAAACACGCTCGCTGAAGTGGTCTCTCAACACAACCTGACCCAAAGCCATATCGCTGAAACTGAAAAA TACGCGCATGTAACCTTTTTCATCAATGGCGGAGTGGAAACGCCTTTTAAAAATGAAAACCGGGTGCTTATCCCAAGCCC AAAAGTTACCACTTATGATTTAAAGCCTGAAATGAGCGCTAAAGAAGTAACCCTTGCGGTGTTAGAGCAAATGAAACTAG GCACGGATTTGATCATTGTGAATTTTGCTAATGGCGATATGGTGGGGCATACGGGGAATTTTGAAGCGAGTGTCAAAGCG GTAGAAGCAGTGGATGCATGCTTAGGGGAAATCCTTTCACTGGCTAAAAAATTGGATTACGCCATGCTTTTAACCAGCGA TCATGGGAATTGCGAGCACATGAAAGACGAAAACCAAAACCCCTTAACCAACCACACCGCCGGGAGCGTGTATTGCTTTG TTTTAGGGGATGGAGTTAGATCCATTAAAAACGGAGCCTTAAACAATATCGCTAGCAGCGTGTTAAAACTCATGGGCCTT AAAGCCCCAGCAACGATGGACGAACCCCTATTTTAA
Upstream 100 bases:
>100_bases CAAAAAACAAGAAGTGTGCAAAAATTGCTCTCCAGGGCAAAGAAACGCGATTTTAGCTAACCGCATCACTCTCATGCAAG AGCTTTAAAAAGTCCTAAAA
Downstream 100 bases:
>100_bases ACTAAAGGAAAAGAATGCAAATTGATGACGCATTATTGCAACGCTTGGAAAAATTGAGCATGTTAGAGATTAAAGACGAG CATAAAGAGAGCGTTAAAGG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVK ISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ MQNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK YAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKA VEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL KAPATMDEPLF
Sequences:
>Translated_491_residues MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVK ISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ MQNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK YAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKA VEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL KAPATMDEPLF >Mature_490_residues AQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGNSEVGHMCIGAGRVLYQDLVKI SLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQM QNICNENIQIATISGRFYAMDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDESF IFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKY AHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAV EAVDACLGEILSLAKKLDYAMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGLK APATMDEPLF
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]
Homologues:
Organism=Escherichia coli, GI1790041, Length=504, Percent_Identity=42.4603174603175, Blast_Score=405, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17507741, Length=505, Percent_Identity=41.980198019802, Blast_Score=386, Evalue=1e-107, Organism=Caenorhabditis elegans, GI32564249, Length=505, Percent_Identity=41.980198019802, Blast_Score=385, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 [H]
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 54792; Mature: 54661
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGN CCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCHHHHHCCCCEECCCCCCCCC SEVGHMCIGAGRVLYQDLVKISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSH CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHH IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA HHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE MDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES ECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCC FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNT EEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEECCHHHHHHH LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSA HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCH KEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDY HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE AMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC KAPATMDEPLF CCCCCCCCCCC >Mature Secondary Structure AQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPEGQMGN CCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCHHHHHCCCCEECCCCCCCCC SEVGHMCIGAGRVLYQDLVKISLSLQNDDLKNNPAFLNTIHKSPVVHLMGLMSDGGVHSH CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHH IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA HHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE MDRDKRFERIELAYHSLMGLNHTPLSPSEYIQSQYDKNITDEFITPACFKNYYGMQDDES ECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCC FIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVLFPKESVQNT EEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEECCHHHHHHH LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIPSPKVTTYDLKPEMSA HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCH KEVTLAVLEQMKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDY HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE AMLLTSDHGNCEHMKDENQNPLTNHTAGSVYCFVLGDGVRSIKNGALNNIASSVLKLMGL EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC KAPATMDEPLF CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA