| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488247
Identifier: 103488247
GI number: 103488247
Start: 2923581
End: 2925014
Strand: Reverse
Name: 103488247
Synonym: Sala_2770
Alternate gene names: NA
Gene position: 2925014-2923581 (Counterclockwise)
Preceding gene: 103488248
Following gene: 103488246
Centisome position: 87.44
GC content: 68.13
Gene sequence:
>1434_bases ATGACGGCGCACGCTGGGAAGGAGCGGAGCCATCGGCCTTGGGGGGCGTTTGTCGCTCTGGTGGCGCCGCTGCTCGCACT CGTCATGGCGGCGCTCGTCTTTGCTCCTCCGGCACAGTCGCAGGGCGAAAGCGCTGCGCGCTACACCGGTGTCGCCTCGT GTGCGGGATCGACCTGTCACGGCCGGATGGAGGGCGACGGCACCGTCGTGCGCCAGGACGAGCTGATGACCTGGCAGGAA CCCTCGACCCCCGGCGGCGCGCACAGCCGTGCCTGGGCGGTGCTCAATAACAATCGCAGCCAGTTCATCGCGCGCAATCT TGGCATCGGTGATCCCGCCAAGGCGCAGATGTGCCTCGGTTGCCACAGCACGGCGGGCACCGCGCGCGGCGTTTCGGCGG AGGACGGCGTCGGCTGCGAATCGTGCCATGGCCCCGCGGGCGGCTGGCTTGCGAGCCATTATGCCGGGGTCGGCACCAAC GCCGATCCCGACCGCGAAATGCGCGACAAGCATCTCGCCAACCTGTCGGCGGGGCTGAAGAAGCTCGAGGATCCGGTGGT GCGCGCGGGCGTGTGCGTCGACTGCCATTTCGGATCGTCCGCCGACGGGCAGTTCGTCACCCACCGCATCATGGCGGCGG GGCATCCGCGCATTTCGTTCGAGCTGGATCTCTTTTCCTCGCTCCAGGCGCATCATCAGGAGGACGCCGATTATGGCTGG CGCAAGTTCGGCGCGGCGGGACGGCGCACCGACCATGTCCAGATGTGGGCGGTGGGACAGGCGGCGGCGATCGAGCGCAG CCTTGCCCTCTTCCAGACGCGGCGCGGGACGGAGGGTATTTTTCCCGAATTTTATTTCCTCGACTGCCACAGTTGCCATC GCCGCATCTTCGATCAGGCGAAGCCGGTGCGCACCGGGCTCGACAATCCGGGCCGCAATCTTCCTGAAGGCATGCCGCCC TATAATGACGAAAATCTGATCATGCTCGCCGCCGCGGCGCGCATGGTCTCGCCCGCGCTCGCCGATCAGCTCGCGGCGCG CACCGCGGCCTTCCACACCGCGATGGCCACCGACCGGGCGAGCGCCGTTGCGGCCGCAGCCCGGCTGTCGCAGACGGTCG CGGCGCTGAAGCGCGCGTTCGCGTCGCGCAGCTTTTCGGGCGCCGATGCCTTCGCGATGGTCGATGCGATTGCGGCGAAG GCGATCCGCGACCGCTATACCGACTATTCGGGGTCGCAGCAGGCGGTGATGGGGGTCGATACGCTGCTCAATGCGATGGT CTCGTCGGGGCGGATCACCGTCGGCGCGGCGGCGGGCATCCGCGCCGACATCGACCGTGCCTATGCTGCGGTGAAAGACC CCAATGCCTATAAGCCCGCCGAGTTTCAGGCGTCGTTCGCCAGCGCGGTGCGCGCGATCGGGGCGCTCCGCTAA
Upstream 100 bases:
>100_bases GCGGGGTTCAAGAAGGTTGCCGACGCGATGCTGGCTTTCGGGGTGGTGTAAATCGGCTCAAGGCGTAAAAGCGCCGGGTT GGGGAAAAGGGGTATTGCGG
Downstream 100 bases:
>100_bases GATGATGCGACGCAAGAGCCATCTTTTCCGGTCGGGCGCGCTTGTCGCGATGGGCACGCTGCTGCTGACCGCGTGCGGCG GCGGGGGCGGCGGCACGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MTAHAGKERSHRPWGAFVALVAPLLALVMAALVFAPPAQSQGESAARYTGVASCAGSTCHGRMEGDGTVVRQDELMTWQE PSTPGGAHSRAWAVLNNNRSQFIARNLGIGDPAKAQMCLGCHSTAGTARGVSAEDGVGCESCHGPAGGWLASHYAGVGTN ADPDREMRDKHLANLSAGLKKLEDPVVRAGVCVDCHFGSSADGQFVTHRIMAAGHPRISFELDLFSSLQAHHQEDADYGW RKFGAAGRRTDHVQMWAVGQAAAIERSLALFQTRRGTEGIFPEFYFLDCHSCHRRIFDQAKPVRTGLDNPGRNLPEGMPP YNDENLIMLAAAARMVSPALADQLAARTAAFHTAMATDRASAVAAAARLSQTVAALKRAFASRSFSGADAFAMVDAIAAK AIRDRYTDYSGSQQAVMGVDTLLNAMVSSGRITVGAAAGIRADIDRAYAAVKDPNAYKPAEFQASFASAVRAIGALR
Sequences:
>Translated_477_residues MTAHAGKERSHRPWGAFVALVAPLLALVMAALVFAPPAQSQGESAARYTGVASCAGSTCHGRMEGDGTVVRQDELMTWQE PSTPGGAHSRAWAVLNNNRSQFIARNLGIGDPAKAQMCLGCHSTAGTARGVSAEDGVGCESCHGPAGGWLASHYAGVGTN ADPDREMRDKHLANLSAGLKKLEDPVVRAGVCVDCHFGSSADGQFVTHRIMAAGHPRISFELDLFSSLQAHHQEDADYGW RKFGAAGRRTDHVQMWAVGQAAAIERSLALFQTRRGTEGIFPEFYFLDCHSCHRRIFDQAKPVRTGLDNPGRNLPEGMPP YNDENLIMLAAAARMVSPALADQLAARTAAFHTAMATDRASAVAAAARLSQTVAALKRAFASRSFSGADAFAMVDAIAAK AIRDRYTDYSGSQQAVMGVDTLLNAMVSSGRITVGAAAGIRADIDRAYAAVKDPNAYKPAEFQASFASAVRAIGALR >Mature_476_residues TAHAGKERSHRPWGAFVALVAPLLALVMAALVFAPPAQSQGESAARYTGVASCAGSTCHGRMEGDGTVVRQDELMTWQEP STPGGAHSRAWAVLNNNRSQFIARNLGIGDPAKAQMCLGCHSTAGTARGVSAEDGVGCESCHGPAGGWLASHYAGVGTNA DPDREMRDKHLANLSAGLKKLEDPVVRAGVCVDCHFGSSADGQFVTHRIMAAGHPRISFELDLFSSLQAHHQEDADYGWR KFGAAGRRTDHVQMWAVGQAAAIERSLALFQTRRGTEGIFPEFYFLDCHSCHRRIFDQAKPVRTGLDNPGRNLPEGMPPY NDENLIMLAAAARMVSPALADQLAARTAAFHTAMATDRASAVAAAARLSQTVAALKRAFASRSFSGADAFAMVDAIAAKA IRDRYTDYSGSQQAVMGVDTLLNAMVSSGRITVGAAAGIRADIDRAYAAVKDPNAYKPAEFQASFASAVRAIGALR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50540; Mature: 50409
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAHAGKERSHRPWGAFVALVAPLLALVMAALVFAPPAQSQGESAARYTGVASCAGSTCH CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC GRMEGDGTVVRQDELMTWQEPSTPGGAHSRAWAVLNNNRSQFIARNLGIGDPAKAQMCLG CCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHC CHSTAGTARGVSAEDGVGCESCHGPAGGWLASHYAGVGTNADPDREMRDKHLANLSAGLK CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KLEDPVVRAGVCVDCHFGSSADGQFVTHRIMAAGHPRISFELDLFSSLQAHHQEDADYGW HHHCHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCH RKFGAAGRRTDHVQMWAVGQAAAIERSLALFQTRRGTEGIFPEFYFLDCHSCHRRIFDQA HHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHC KPVRTGLDNPGRNLPEGMPPYNDENLIMLAAAARMVSPALADQLAARTAAFHTAMATDRA CHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVAAAARLSQTVAALKRAFASRSFSGADAFAMVDAIAAKAIRDRYTDYSGSQQAVMGVD HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH TLLNAMVSSGRITVGAAAGIRADIDRAYAAVKDPNAYKPAEFQASFASAVRAIGALR HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAHAGKERSHRPWGAFVALVAPLLALVMAALVFAPPAQSQGESAARYTGVASCAGSTCH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC GRMEGDGTVVRQDELMTWQEPSTPGGAHSRAWAVLNNNRSQFIARNLGIGDPAKAQMCLG CCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHC CHSTAGTARGVSAEDGVGCESCHGPAGGWLASHYAGVGTNADPDREMRDKHLANLSAGLK CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KLEDPVVRAGVCVDCHFGSSADGQFVTHRIMAAGHPRISFELDLFSSLQAHHQEDADYGW HHHCHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCH RKFGAAGRRTDHVQMWAVGQAAAIERSLALFQTRRGTEGIFPEFYFLDCHSCHRRIFDQA HHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHC KPVRTGLDNPGRNLPEGMPPYNDENLIMLAAAARMVSPALADQLAARTAAFHTAMATDRA CHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVAAAARLSQTVAALKRAFASRSFSGADAFAMVDAIAAKAIRDRYTDYSGSQQAVMGVD HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH TLLNAMVSSGRITVGAAAGIRADIDRAYAAVKDPNAYKPAEFQASFASAVRAIGALR HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA