| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488246
Identifier: 103488246
GI number: 103488246
Start: 2921603
End: 2923579
Strand: Reverse
Name: 103488246
Synonym: Sala_2769
Alternate gene names: NA
Gene position: 2923579-2921603 (Counterclockwise)
Preceding gene: 103488247
Following gene: 103488245
Centisome position: 87.4
GC content: 69.45
Gene sequence:
>1977_bases ATGATGCGACGCAAGAGCCATCTTTTCCGGTCGGGCGCGCTTGTCGCGATGGGCACGCTGCTGCTGACCGCGTGCGGCGG CGGGGGCGGCGGCACGCCCACGCCATCGCCCGCTCCGACGCCGACGCCCCCGCCGACCGGGGGGCTCTACACCCCGCCCG CTGCCGAATCGCTCAGCGTCGGCGACGTGCAGACGATCCTCGCCAATGCGATCTCGGAGGCGCAGGCGCGCGGGCTGCCC TCGGTGATCGCGGTGACCGACCGCGTCGGCAATGTGCTGGCGGTGTTCCGCATGAACGGCGCGCGCGCGACCGCGACGAC CTCGGCGGCGCCCAATGGCGACAATATCGACGCGCAGAATGTCACCTTTCCGGCCGAAGGCGGCGCGATCGCCAAGGCGG TGACGGGCGCTTATCTCTCAAGCGGCGGCAACGCCTTTTCGACGCGCACCGCAAGCCAGATCGTCCAGGAACATTTTCCG CCCGCGCCCACCACCGTCGGCCTCGAAAGCGGCCCGCTGTTCGGCGTGCAGTTCAGCCAGCTGCCGTGCAGCGACCTGTC TGCGCGCTTCGGCGCCGCGGGACCGGCCGCGCTGATCGGTCCGAAACGCTCGCCGCTCGGTCTCGCCGCCGATCCCGGCG GACTGCCGCTCTACAAGAATGGCGTACTCGTCGGCGGCATCGGGGTGATGGGCGACGGCGTCTATGGCAGCGACCCCGAT ATCCTCGACATCGACGAGGATGACGAGGAGTTCATCGCGCTTGCGGGAACGCGCGGGTTCGAGGCGCCAAGCACGATCAC CGCCGACAGGATTGCCGTCGACGGGACGACCTTGCGCTTTTCGGACGCGACCTTCGCCGGGGTGATGACAAGCGGCGGCG CGAGTTTCGCGAGCTTCAACGGCAGCGCGGGCAATCTCGTCGCCGTCATCGGCTATGCCAATGCCGCGATCACCGCAGGG GTTGTCTATGGCAGCGAAGCGTCGGGCATCCGCGCCTCGACGCCGGCCGAATTTTCGAACCGCGACGCCTTCATCCTCAC CGACGGCAGCGGCGCCAACCGCTACCCGGTCCGCGCGGGCACCGACGGCGCGAGCGTCGCGGCGCCGCTGACGGCGGCCG AGGCGCGCGCGGTGCTCGAGGAAGCCTTTGCTGTGATGAGCCGCGCGCGCGCGCAAATCCGCCGCCCGCTCGACAGCCGC GCGCAGGTGACGATCAGCCTCGTCGACACGCACGGCGCGGTGCTCGGCATCGTCCGCTCGCCTGACGCGCCGATCTTCGG CACCGACGTCTCCTTGCAGAAAGCGCGCACCGCCGCCTTTTTCTCGGGCGCACAGGCGGCGACCGAGCTGTCGGCCAACG CGAGCGCCGACGTCGCCGCCTTCGTGCCCGCGGTGCGCAGTTTCCTGAACGATCCCGCCGCGCTCACCGGCGCCGTTGCA TTTGCCGACCGCTCGGGCGGCAATCTGTCGCGCCCCTATTTCCCCGATGGTGAGGTCGGGCGTCCGCACGGGCCGCTGTC GCGCCCGATCGCGCAGTTCAATCCCTTTTCGACCGGGCTGCAATCGGCGCTGATCATCGGCAATCTGGGCGCGCATCTGG GCTTTGTGTCGGGCGCGAGCCCGACCGACACGCCGCAGCGCTGCACCACCCTGCCCGACGCCGCGCCGGGGCAGAACCGG CTCCAGAACGGCATTCAGATCTTCCCCGGATCGGTGCCCATCTATCGCGGTTCGACGCTGGTCGGCGCCATCGGCGTGTC GGGCGACGGCATCGACCAGGACGATATGATCAGTTTTCTGGGCGCGCACAACGCCGGGGCGCGCATCGGCGGCATCGGCA ATGCTCCCAAGGCCATCCGCGCCGACAATGTCGTCGTGACGCTCGCCGACAATCGCACGGTGCGCCTGCGCTATATCAGT TGTCCCTTTGCGCCTTTCCTCGACACCGCGCAGCAAAATGTCTGCGACGGGCTATAG
Upstream 100 bases:
>100_bases CGTGCCTATGCTGCGGTGAAAGACCCCAATGCCTATAAGCCCGCCGAGTTTCAGGCGTCGTTCGCCAGCGCGGTGCGCGC GATCGGGGCGCTCCGCTAAG
Downstream 100 bases:
>100_bases GCGATGATGACGGGGGGCAGCCTGTGGCCGGTCATCGCGACGCTCGCGGCGCAGGGTGCGCCGGGGACCGAAGCGCCGTT GCCGCCGCCCGCGCCTGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MMRRKSHLFRSGALVAMGTLLLTACGGGGGGTPTPSPAPTPTPPPTGGLYTPPAAESLSVGDVQTILANAISEAQARGLP SVIAVTDRVGNVLAVFRMNGARATATTSAAPNGDNIDAQNVTFPAEGGAIAKAVTGAYLSSGGNAFSTRTASQIVQEHFP PAPTTVGLESGPLFGVQFSQLPCSDLSARFGAAGPAALIGPKRSPLGLAADPGGLPLYKNGVLVGGIGVMGDGVYGSDPD ILDIDEDDEEFIALAGTRGFEAPSTITADRIAVDGTTLRFSDATFAGVMTSGGASFASFNGSAGNLVAVIGYANAAITAG VVYGSEASGIRASTPAEFSNRDAFILTDGSGANRYPVRAGTDGASVAAPLTAAEARAVLEEAFAVMSRARAQIRRPLDSR AQVTISLVDTHGAVLGIVRSPDAPIFGTDVSLQKARTAAFFSGAQAATELSANASADVAAFVPAVRSFLNDPAALTGAVA FADRSGGNLSRPYFPDGEVGRPHGPLSRPIAQFNPFSTGLQSALIIGNLGAHLGFVSGASPTDTPQRCTTLPDAAPGQNR LQNGIQIFPGSVPIYRGSTLVGAIGVSGDGIDQDDMISFLGAHNAGARIGGIGNAPKAIRADNVVVTLADNRTVRLRYIS CPFAPFLDTAQQNVCDGL
Sequences:
>Translated_658_residues MMRRKSHLFRSGALVAMGTLLLTACGGGGGGTPTPSPAPTPTPPPTGGLYTPPAAESLSVGDVQTILANAISEAQARGLP SVIAVTDRVGNVLAVFRMNGARATATTSAAPNGDNIDAQNVTFPAEGGAIAKAVTGAYLSSGGNAFSTRTASQIVQEHFP PAPTTVGLESGPLFGVQFSQLPCSDLSARFGAAGPAALIGPKRSPLGLAADPGGLPLYKNGVLVGGIGVMGDGVYGSDPD ILDIDEDDEEFIALAGTRGFEAPSTITADRIAVDGTTLRFSDATFAGVMTSGGASFASFNGSAGNLVAVIGYANAAITAG VVYGSEASGIRASTPAEFSNRDAFILTDGSGANRYPVRAGTDGASVAAPLTAAEARAVLEEAFAVMSRARAQIRRPLDSR AQVTISLVDTHGAVLGIVRSPDAPIFGTDVSLQKARTAAFFSGAQAATELSANASADVAAFVPAVRSFLNDPAALTGAVA FADRSGGNLSRPYFPDGEVGRPHGPLSRPIAQFNPFSTGLQSALIIGNLGAHLGFVSGASPTDTPQRCTTLPDAAPGQNR LQNGIQIFPGSVPIYRGSTLVGAIGVSGDGIDQDDMISFLGAHNAGARIGGIGNAPKAIRADNVVVTLADNRTVRLRYIS CPFAPFLDTAQQNVCDGL >Mature_658_residues MMRRKSHLFRSGALVAMGTLLLTACGGGGGGTPTPSPAPTPTPPPTGGLYTPPAAESLSVGDVQTILANAISEAQARGLP SVIAVTDRVGNVLAVFRMNGARATATTSAAPNGDNIDAQNVTFPAEGGAIAKAVTGAYLSSGGNAFSTRTASQIVQEHFP PAPTTVGLESGPLFGVQFSQLPCSDLSARFGAAGPAALIGPKRSPLGLAADPGGLPLYKNGVLVGGIGVMGDGVYGSDPD ILDIDEDDEEFIALAGTRGFEAPSTITADRIAVDGTTLRFSDATFAGVMTSGGASFASFNGSAGNLVAVIGYANAAITAG VVYGSEASGIRASTPAEFSNRDAFILTDGSGANRYPVRAGTDGASVAAPLTAAEARAVLEEAFAVMSRARAQIRRPLDSR AQVTISLVDTHGAVLGIVRSPDAPIFGTDVSLQKARTAAFFSGAQAATELSANASADVAAFVPAVRSFLNDPAALTGAVA FADRSGGNLSRPYFPDGEVGRPHGPLSRPIAQFNPFSTGLQSALIIGNLGAHLGFVSGASPTDTPQRCTTLPDAAPGQNR LQNGIQIFPGSVPIYRGSTLVGAIGVSGDGIDQDDMISFLGAHNAGARIGGIGNAPKAIRADNVVVTLADNRTVRLRYIS CPFAPFLDTAQQNVCDGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66550; Mature: 66550
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRRKSHLFRSGALVAMGTLLLTACGGGGGGTPTPSPAPTPTPPPTGGLYTPPAAESLSV CCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDVQTILANAISEAQARGLPSVIAVTDRVGNVLAVFRMNGARATATTSAAPNGDNIDAQN CHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCC VTFPAEGGAIAKAVTGAYLSSGGNAFSTRTASQIVQEHFPPAPTTVGLESGPLFGVQFSQ EEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECC LPCSDLSARFGAAGPAALIGPKRSPLGLAADPGGLPLYKNGVLVGGIGVMGDGVYGSDPD CCCHHHHHHCCCCCCHHEECCCCCCCCEECCCCCCCEEECCEEEECCEEEECCCCCCCCC ILDIDEDDEEFIALAGTRGFEAPSTITADRIAVDGTTLRFSDATFAGVMTSGGASFASFN EEECCCCCCCEEEEECCCCCCCCCCEECCEEEECCCEEEECCCEEEEEEECCCCCEEECC GSAGNLVAVIGYANAAITAGVVYGSEASGIRASTPAEFSNRDAFILTDGSGANRYPVRAG CCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECC TDGASVAAPLTAAEARAVLEEAFAVMSRARAQIRRPLDSRAQVTISLVDTHGAVLGIVRS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEC PDAPIFGTDVSLQKARTAAFFSGAQAATELSANASADVAAFVPAVRSFLNDPAALTGAVA CCCCEEECCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHEEEE FADRSGGNLSRPYFPDGEVGRPHGPLSRPIAQFNPFSTGLQSALIIGNLGAHLGFVSGAS EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHEEEEECCHHHHEECCCCC PTDTPQRCTTLPDAAPGQNRLQNGIQIFPGSVPIYRGSTLVGAIGVSGDGIDQDDMISFL CCCCHHHHCCCCCCCCCHHHHCCCCEECCCCCCEEECCEEEEEEECCCCCCCHHHHHHHH GAHNAGARIGGIGNAPKAIRADNVVVTLADNRTVRLRYISCPFAPFLDTAQQNVCDGL HCCCCCCEECCCCCCCCCEECCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCC >Mature Secondary Structure MMRRKSHLFRSGALVAMGTLLLTACGGGGGGTPTPSPAPTPTPPPTGGLYTPPAAESLSV CCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDVQTILANAISEAQARGLPSVIAVTDRVGNVLAVFRMNGARATATTSAAPNGDNIDAQN CHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCC VTFPAEGGAIAKAVTGAYLSSGGNAFSTRTASQIVQEHFPPAPTTVGLESGPLFGVQFSQ EEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECC LPCSDLSARFGAAGPAALIGPKRSPLGLAADPGGLPLYKNGVLVGGIGVMGDGVYGSDPD CCCHHHHHHCCCCCCHHEECCCCCCCCEECCCCCCCEEECCEEEECCEEEECCCCCCCCC ILDIDEDDEEFIALAGTRGFEAPSTITADRIAVDGTTLRFSDATFAGVMTSGGASFASFN EEECCCCCCCEEEEECCCCCCCCCCEECCEEEECCCEEEECCCEEEEEEECCCCCEEECC GSAGNLVAVIGYANAAITAGVVYGSEASGIRASTPAEFSNRDAFILTDGSGANRYPVRAG CCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECC TDGASVAAPLTAAEARAVLEEAFAVMSRARAQIRRPLDSRAQVTISLVDTHGAVLGIVRS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEC PDAPIFGTDVSLQKARTAAFFSGAQAATELSANASADVAAFVPAVRSFLNDPAALTGAVA CCCCEEECCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHEEEE FADRSGGNLSRPYFPDGEVGRPHGPLSRPIAQFNPFSTGLQSALIIGNLGAHLGFVSGAS EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHEEEEECCHHHHEECCCCC PTDTPQRCTTLPDAAPGQNRLQNGIQIFPGSVPIYRGSTLVGAIGVSGDGIDQDDMISFL CCCCHHHHCCCCCCCCCHHHHCCCCEECCCCCCEEECCEEEEEEECCCCCCCHHHHHHHH GAHNAGARIGGIGNAPKAIRADNVVVTLADNRTVRLRYISCPFAPFLDTAQQNVCDGL HCCCCCCEECCCCCCCCCEECCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA