| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488213
Identifier: 103488213
GI number: 103488213
Start: 2881629
End: 2883887
Strand: Reverse
Name: 103488213
Synonym: Sala_2736
Alternate gene names: NA
Gene position: 2883887-2881629 (Counterclockwise)
Preceding gene: 103488214
Following gene: 103488212
Centisome position: 86.21
GC content: 66.67
Gene sequence:
>2259_bases ATGATCGCAACATCTCCGCCGCGCCGCTGGCTGTTCGTGCTGACGATCCTTGTCGGCAGCTTCCTCCTCTTCATGGTGCA GCCGATGGTCGCGCGCATGGTCCTGCCAAGGCTGGGCGGTGCGCCAATGGTGTGGAACAGCGCGATGCTGGTCTATCAGG CGCTGCTCCTCGGCGGCTATGCCTATGCGCACTGGCTCGGGCGTTTCAGCCTGCGGCGACAGGCGATCATCCATCTTGCG CTCTTTCTCGTTGCGGCGCTTTGGCTGCCGATCGGTATCGCCGCGATTGCGCCGCCGGGGCCGGGACAGGAGGCGCTGTG GGTGCCGCTCCTCCTCTTCGCGTCGATCGGCCCCGTCTTTTTTGTCGTATCGGCGCAGGCGCCGCTGATGCAGCGCTGGT TCGCCGCCGACCCGAAAGCCGGCGATCCCTATTATCTCTATGCCGCCTCGAACCTCGGCAGCTTTGCGGGGCTGCTCAGC TATCCCGCGCTGGTCGAGCCCAACATGCCGCTGGCGGCGCAGAGCTGGGGCTGGAGCGCCGGTTATGCGCTGCTTGTGCT GCTCGTCGTCGCGGCGGCGGCCGCGCGTTGGCACGGAGCCAGCGGCGTACAGCTCGACGAACCGGCCGACGCGCCGCGCC CCTCGCTCCGGCGCCAGCTTCATTGGCTGCTGATCGCCGCGGTGCCGTCGGGGCTGATGCTGTCGACGACGACGCACCTC ACCACCGACATCGTCGCGATGCCTTTGCTCTGGGTGTTGCCGCTGGGCCTCTATCTGTTCAGCTTCGTCATCGCCTTTTC GCGCTTCGAGCGGCCGACCGAGATCATCGCGCTGCTCGCCCCGATCGTGCTGCTTTCCGTCGGCGGGCTCGGGCTTTTGA GTTCGGGCGGCGGGTCGATGACGATTGCGCTGTCCAGCCTGGCGATGCTCTTCATCGTCGCGACCGCGCTCCACGGCTAT CTCTATTACCTGCGGCCCGCTGCCCGGCATCTGACGCTTTTCTATCTGCTCATGTCGGCGGGCGGTGTGCTCGGCGGCTT GTTTGCCGCCTTGTTCGCGCCGCTCCTTTTCGACTGGGTGTATGAACATCCGCTGCTGATCCTCGCTGCGGGCTTGCTGT TGCCCCTGCCGACGCTTTTCCCCTGGGACAAGTGGCTGGGCCTTGAACCCAAAACGGCGCGGGCGTCGGCGGCGCTGCTC GTTGCGATCGCCGCGCTTGCCGCGTGGAACATGGTCGAACGATGGACCGGGCGCGCCGACGGCGACATTGCCGCATGGGG CATCGCCATCTTCGTCATCGGCATCCTCGTCATCGGATGGCGCTGGGCCTATGTGTCGGTGCTGGCGTTGCTGATGATCG GTGTCGGTGGCTGGGACACGATCCGGGAAAGCTTCACGGGCGCGCGCGTGCGCAGCTATTTCGGCGTCTACACGGTCACC GACTATCCGCATGCCAACCAGCGGCGGCTTGCGCATGGCACGACGCTTCACGGGCTTCAGCGCACCGATGCGGAACAACG CCGCCAGCCGACGACCTATTATGGCCCCCAATCGGGAGTTGGCCTGACGCTCGCGCAGGCCGAAACGCTCGCGGGTTCCG ACGCGGCGGTCGCGATCGTCGGGCTCGGCGCCGGCACGCTCGCCTGTTACCGCAAGCCGGGGCAGGACTGGACGATTTTC GAGATCGATCCCGTGATGGTGGACATCGCGCGCGATCCCGACAAGTTCACCTTTCTGTCGGACTGCGCTCCCGATGCGGC GATCGTCATCGGCGACGCGCGGCTTCAACTCGCGAACCAGCCGCCGGGGCGCTTCGACATTGTCGTCATCGACGCCTTTT CGTCCGACGCGATTCCGCTCCACCTGCTGACCAGCGAGGCGATCGGCATTTATGCGCGCGCGATGAAGCCCGATGGCGTC CTGCTCATCCATATCTCCAACCGCTTTTTCGCGCTGGAGCCCGTGCTCGCGGCCGAAGCGAAGGCGCGCGGCTGGAGCGC GGCGATCCGCATGGACCCCGGCCCCGCGAGCGGCAGCGACTATGACGACCTGACCGCGTCGAGCTGGGTTGCGCTCACCG CGACGCCCGACCGGATGCGGCAACTCACCGGCGGGATCCGTCCGCGCGACGAATCCCCTGCCGATGGCGCGTGGGTGCCG CTGGCTGCCAAAGCCGGTTTCGAGCGCTGGACCGACGATTATGCCTCGACGCTGCCCGTGCTCATCTGGAAGAATGTGAT CGGAGGCCGCGACGAATGA
Upstream 100 bases:
>100_bases ATCCTCCTCGAAACCCTGCTCGCTTTTCGCCGCGCGGGGGCGTCGGGGGTGCTCAGTTACCACGCGCTCCACGCGGCGCG GCTGCTTGGCGCCTGACGCG
Downstream 100 bases:
>100_bases TTCGTTCCGATGTCAGCATCATCAGCGTGGGCGGAAAGGCACCACGGATCGACCCCAGCGCCTTCATCGCGCCCGGTTGC CGGATCATCGGCGACGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Spermine/Spermidine Synthase Protein; Integral Membrane Protein-Like; Ferrichrome ABC Transporter Permease; Integral Membrane Protein
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE
Sequences:
>Translated_752_residues MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE >Mature_752_residues MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGYAYAHWLGRFSLRRQAIIHLA LFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVFFVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLS YPALVEPNMPLAAQSWGWSAGYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSMTIALSSLAMLFIVATALHGY LYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWVYEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALL VAIAALAAWNMVERWTGRADGDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIVGLGAGTLACYRKPGQDWTIF EIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQPPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGV LLIHISNRFFALEPVLAAEAKARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81180; Mature: 81180
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AYAHWLGRFSLRRQAIIHLALFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEE FVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLSYPALVEPNMPLAAQSWGWSA EEEECCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEECCCCCCCCCCCCCCH GYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHH TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEE TIALSSLAMLFIVATALHGYLYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWV EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALLVAIAALAAWNMVERWTGRAD HHCHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCEEEEE DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIV CCCCCCCCHHHCCCHHCCCHHCCHHHHCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEE GLGAGTLACYRKPGQDWTIFEIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQ ECCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCEEEHHCCCCCCEEEEECCEEEECCC PPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGVLLIHISNRFFALEPVLAAEA CCCCEEEEEEEECCCCCEEEEEECHHHHHHEEEEECCCCEEEEEECCCEEEECHHHHHHH KARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP HCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEE LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE EHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIATSPPRRWLFVLTILVGSFLLFMVQPMVARMVLPRLGGAPMVWNSAMLVYQALLLGGY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AYAHWLGRFSLRRQAIIHLALFLVAALWLPIGIAAIAPPGPGQEALWVPLLLFASIGPVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEE FVVSAQAPLMQRWFAADPKAGDPYYLYAASNLGSFAGLLSYPALVEPNMPLAAQSWGWSA EEEECCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEECCCCCCCCCCCCCCH GYALLVLLVVAAAAARWHGASGVQLDEPADAPRPSLRRQLHWLLIAAVPSGLMLSTTTHL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHH TTDIVAMPLLWVLPLGLYLFSFVIAFSRFERPTEIIALLAPIVLLSVGGLGLLSSGGGSM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEE TIALSSLAMLFIVATALHGYLYYLRPAARHLTLFYLLMSAGGVLGGLFAALFAPLLFDWV EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YEHPLLILAAGLLLPLPTLFPWDKWLGLEPKTARASAALLVAIAALAAWNMVERWTGRAD HHCHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GDIAAWGIAIFVIGILVIGWRWAYVSVLALLMIGVGGWDTIRESFTGARVRSYFGVYTVT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCEEEEE DYPHANQRRLAHGTTLHGLQRTDAEQRRQPTTYYGPQSGVGLTLAQAETLAGSDAAVAIV CCCCCCCCHHHCCCHHCCCHHCCHHHHCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEE GLGAGTLACYRKPGQDWTIFEIDPVMVDIARDPDKFTFLSDCAPDAAIVIGDARLQLANQ ECCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCEEEHHCCCCCCEEEEECCEEEECCC PPGRFDIVVIDAFSSDAIPLHLLTSEAIGIYARAMKPDGVLLIHISNRFFALEPVLAAEA CCCCEEEEEEEECCCCCEEEEEECHHHHHHEEEEECCCCEEEEEECCCEEEECHHHHHHH KARGWSAAIRMDPGPASGSDYDDLTASSWVALTATPDRMRQLTGGIRPRDESPADGAWVP HCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEE LAAKAGFERWTDDYASTLPVLIWKNVIGGRDE EHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA