Click here to switch to the map view.

The map label for this gene is yrdA [C]

Identifier: 103488212

GI number: 103488212

Start: 2881078

End: 2881632

Strand: Reverse

Name: yrdA [C]

Synonym: Sala_2735

Alternate gene names: 103488212

Gene position: 2881632-2881078 (Counterclockwise)

Preceding gene: 103488213

Following gene: 103488205

Centisome position: 86.14

GC content: 65.95

Gene sequence:

>555_bases
ATGATTCGTTCCGATGTCAGCATCATCAGCGTGGGCGGAAAGGCACCACGGATCGACCCCAGCGCCTTCATCGCGCCCGG
TTGCCGGATCATCGGCGACGTGACGATCGGACCCGACGTCAGCATCTGGTATAATTGCGTTCTGCGCGCCGATGTCAGCC
ATATTGTCGTCGGCGCGCGGTCGAACATCCAGGACGGCAGCGTCGTCCATTGCGATGGACCGATGCCGCACCGGCCGGAG
GGCTTTCCGACGATCATCGGCGAGGATGTGCTGATCGGCCATATGGCGATGGTCCACGGCTGCACGCTCGCGGACCGCGC
GTTCGTGGGCCTCAAGGCGACGGTGATGAACGGGTGCCGCATCGGCAGCGACGCGATGCTCGCCGCGGGGGCGCTGCTCA
CCGAAAACAAGGAAATCCCCGACCGCGAACTCTGGGCGGGATCGCCGGCGCGCCGGGTGCGCGAGATCGACGATCCGCAG
GCCGCGGGCATGCAGATGGGCGTCGCCCACTATGTGATGAACGGCCGGATGCACAAGGCGGCGGTGGAGGGGTAA

Upstream 100 bases:

>100_bases
TGCCGCTGGCTGCCAAAGCCGGTTTCGAGCGCTGGACCGACGATTATGCCTCGACGCTGCCCGTGCTCATCTGGAAGAAT
GTGATCGGAGGCCGCGACGA

Downstream 100 bases:

>100_bases
GAATCTCCCCTCCCGCACAGCGGGAGGGGAACAAAGCTCAGCTGAAATTCACCATAGCGTAGAGCATCGGGATCGACAGC
AGCGTGTTGGTCCGCGAAAA

Product: acetyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MIRSDVSIISVGGKAPRIDPSAFIAPGCRIIGDVTIGPDVSIWYNCVLRADVSHIVVGARSNIQDGSVVHCDGPMPHRPE
GFPTIIGEDVLIGHMAMVHGCTLADRAFVGLKATVMNGCRIGSDAMLAAGALLTENKEIPDRELWAGSPARRVREIDDPQ
AAGMQMGVAHYVMNGRMHKAAVEG

Sequences:

>Translated_184_residues
MIRSDVSIISVGGKAPRIDPSAFIAPGCRIIGDVTIGPDVSIWYNCVLRADVSHIVVGARSNIQDGSVVHCDGPMPHRPE
GFPTIIGEDVLIGHMAMVHGCTLADRAFVGLKATVMNGCRIGSDAMLAAGALLTENKEIPDRELWAGSPARRVREIDDPQ
AAGMQMGVAHYVMNGRMHKAAVEG
>Mature_184_residues
MIRSDVSIISVGGKAPRIDPSAFIAPGCRIIGDVTIGPDVSIWYNCVLRADVSHIVVGARSNIQDGSVVHCDGPMPHRPE
GFPTIIGEDVLIGHMAMVHGCTLADRAFVGLKATVMNGCRIGSDAMLAAGALLTENKEIPDRELWAGSPARRVREIDDPQ
AAGMQMGVAHYVMNGRMHKAAVEG

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=157, Percent_Identity=38.8535031847134, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787667, Length=167, Percent_Identity=36.5269461077844, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87081681, Length=181, Percent_Identity=33.7016574585635, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001451
- InterPro:   IPR011004 [H]

Pfam domain/function: PF00132 Hexapep [H]

EC number: NA

Molecular weight: Translated: 19522; Mature: 19522

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSDVSIISVGGKAPRIDPSAFIAPGCRIIGDVTIGPDVSIWYNCVLRADVSHIVVGAR
CCCCCCEEEEECCCCCCCCCCCEECCCCEEEEEEEECCCHHHHHHHHEECCCCEEEEECC
SNIQDGSVVHCDGPMPHRPEGFPTIIGEDVLIGHMAMVHGCTLADRAFVGLKATVMNGCR
CCCCCCCEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHCCCHHHHHHHCEEEEECCCCE
IGSDAMLAAGALLTENKEIPDRELWAGSPARRVREIDDPQAAGMQMGVAHYVMNGRMHKA
ECCCHHHHHCCCEECCCCCCCHHHCCCCHHHHHHCCCCCHHHCHHHHHHHHHHCCCCCEE
AVEG
ECCC
>Mature Secondary Structure
MIRSDVSIISVGGKAPRIDPSAFIAPGCRIIGDVTIGPDVSIWYNCVLRADVSHIVVGAR
CCCCCCEEEEECCCCCCCCCCCEECCCCEEEEEEEECCCHHHHHHHHEECCCCEEEEECC
SNIQDGSVVHCDGPMPHRPEGFPTIIGEDVLIGHMAMVHGCTLADRAFVGLKATVMNGCR
CCCCCCCEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHCCCHHHHHHHCEEEEECCCCE
IGSDAMLAAGALLTENKEIPDRELWAGSPARRVREIDDPQAAGMQMGVAHYVMNGRMHKA
ECCCHHHHHCCCEECCCCCCCHHHCCCCHHHHHHCCCCCHHHCHHHHHHHHHHCCCCCEE
AVEG
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]