| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488049
Identifier: 103488049
GI number: 103488049
Start: 2711883
End: 2712626
Strand: Reverse
Name: 103488049
Synonym: Sala_2571
Alternate gene names: NA
Gene position: 2712626-2711883 (Counterclockwise)
Preceding gene: 103488050
Following gene: 103488042
Centisome position: 81.09
GC content: 60.08
Gene sequence:
>744_bases ATGAAGGCTCTGATTGCCTTCGATCTTGACGGCACACTTGCCGAAAGCAAGCAACCGCTGGACGAACGGATGAGACAAGC ACTCGCAGACCTGCTGGCCGTCGCCGAGGTCGCGATTATCTCGGGCGGGGATTGGCCGCAATTCGACAAGCAGGTTGCAA GCCGACTCCCTGCAAGAGCGGATCGTGGCAAGTTGTGGCTACTGCCGACCACCGGAACCAAGCTCTATCGTTATGACGGG GCGTGGCGGCGGGCTTACGCCGAGCTTTTCAGCAACGAGGAAAAGAAGGCAATTCTCGACGCCTTCGATGCGGCGCTGAA AGCAACCGGCTTCCAGGCGGAGCGGAGTTGGGGCGAGCGGATCGAGGATCGTGGGAGTCAGATAACCTTCTCCGCGCTGG GACAGCAGGCGCCCCTGGACGCCAAGGAGCAATGGGATCCAGACTTTGCCAAGCGCAAGGCAATCCAGGCCGAGCTAAGT CAACGCCTGCCGAACTTTTCGATCAAGCTGGGCGGGACCACGTCGATCGACATCACCCGAAAGGGCGTAGACAAGGCCTA TGGCCTCAAACGCCTGAGCCGCGAAAGCGGCATTCCACTCGATGCGATGCTGTTCGTGGGCGACGCCATCTTCCCGGGCG GAAACGACTATCCCGCCGAGCAGTTGGGTCTCGATACGATTTCCGTTCGCGATCCGCAAGAAACCCTTAGCGTAATTGCG GCAATCGTCGCTTGCCTCGCCTGA
Upstream 100 bases:
>100_bases CCGCATATTGGAGGCGCTTGCTCCGATCGCAGGAAGGCGGCCGCCCGATATTTGAGCACGGCGGACGAGATACCCCGATC GCCATATTGGAGCTGTGGTC
Downstream 100 bases:
>100_bases CCGCCCCGCATTCCCCGAAATCTGCATCAATGATGCCGGCGCGAACGATGATGTCGTTCGCGGTGGTGGCGCGGCCGATC GTGACGGTCATATCGGTGAC
Product: HAD family hydrolase
Products: NA
Alternate protein names: Phosphomannomutase; HAD Family Hydrolase; HAD-Superfamily Hydrolase; HAD Superfamily Hydrolase; HAD Hydrolase Family IIB; Hydrolase; Eukaryotic Phosphomannomutase; Alpha-Phosphoglucomutase
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MKALIAFDLDGTLAESKQPLDERMRQALADLLAVAEVAIISGGDWPQFDKQVASRLPARADRGKLWLLPTTGTKLYRYDG AWRRAYAELFSNEEKKAILDAFDAALKATGFQAERSWGERIEDRGSQITFSALGQQAPLDAKEQWDPDFAKRKAIQAELS QRLPNFSIKLGGTTSIDITRKGVDKAYGLKRLSRESGIPLDAMLFVGDAIFPGGNDYPAEQLGLDTISVRDPQETLSVIA AIVACLA
Sequences:
>Translated_247_residues MKALIAFDLDGTLAESKQPLDERMRQALADLLAVAEVAIISGGDWPQFDKQVASRLPARADRGKLWLLPTTGTKLYRYDG AWRRAYAELFSNEEKKAILDAFDAALKATGFQAERSWGERIEDRGSQITFSALGQQAPLDAKEQWDPDFAKRKAIQAELS QRLPNFSIKLGGTTSIDITRKGVDKAYGLKRLSRESGIPLDAMLFVGDAIFPGGNDYPAEQLGLDTISVRDPQETLSVIA AIVACLA >Mature_247_residues MKALIAFDLDGTLAESKQPLDERMRQALADLLAVAEVAIISGGDWPQFDKQVASRLPARADRGKLWLLPTTGTKLYRYDG AWRRAYAELFSNEEKKAILDAFDAALKATGFQAERSWGERIEDRGSQITFSALGQQAPLDAKEQWDPDFAKRKAIQAELS QRLPNFSIKLGGTTSIDITRKGVDKAYGLKRLSRESGIPLDAMLFVGDAIFPGGNDYPAEQLGLDTISVRDPQETLSVIA AIVACLA
Specific function: Unknown
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321063, Length=253, Percent_Identity=24.5059288537549, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27103; Mature: 27103
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALIAFDLDGTLAESKQPLDERMRQALADLLAVAEVAIISGGDWPQFDKQVASRLPARA CCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC DRGKLWLLPTTGTKLYRYDGAWRRAYAELFSNEEKKAILDAFDAALKATGFQAERSWGER CCCCEEEEECCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH IEDRGSQITFSALGQQAPLDAKEQWDPDFAKRKAIQAELSQRLPNFSIKLGGTTSIDITR HHHCCCEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEH KGVDKAYGLKRLSRESGIPLDAMLFVGDAIFPGGNDYPAEQLGLDTISVRDPQETLSVIA HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCHHHHHHHHH AIVACLA HHHHHHC >Mature Secondary Structure MKALIAFDLDGTLAESKQPLDERMRQALADLLAVAEVAIISGGDWPQFDKQVASRLPARA CCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC DRGKLWLLPTTGTKLYRYDGAWRRAYAELFSNEEKKAILDAFDAALKATGFQAERSWGER CCCCEEEEECCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH IEDRGSQITFSALGQQAPLDAKEQWDPDFAKRKAIQAELSQRLPNFSIKLGGTTSIDITR HHHCCCEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEH KGVDKAYGLKRLSRESGIPLDAMLFVGDAIFPGGNDYPAEQLGLDTISVRDPQETLSVIA HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCHHHHHHHHH AIVACLA HHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA