| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487996
Identifier: 103487996
GI number: 103487996
Start: 2652821
End: 2653873
Strand: Reverse
Name: 103487996
Synonym: Sala_2517
Alternate gene names: NA
Gene position: 2653873-2652821 (Counterclockwise)
Preceding gene: 103487997
Following gene: 103487995
Centisome position: 79.33
GC content: 67.24
Gene sequence:
>1053_bases ATGGAAAGTCCAGCCCGTGAATTGGCGCGCCGCCTCGCCGACAATGCCGAAGCCGTCTGCCGCCACTATCTCCCCAACGG CCGCCGCGAAGGCCGCTACTGGCTTGTCGGCGATGTCCGGGGGACGCCCGGTCGCAGCCTTTACCTGTTGCTGTCGTCGT CGGGCGACGGGCGCGGCCGGGCGGGGAAATGGACCGATGCCGCGAGCGGCGAGCATGGCGACCTGCTCGATGTCATCGCC GCCAGTTGCGGTCACGCCGAATTGCGCGAGACGCTCGCCGAGGCGCGGCGATTTTTGAGCATGCCGATGTCGATGCCGCA GCCGGCGGGGTCTCGATCGCCGCGATCGCGCAAGGCGTCGACGGGAACGCCTGCGGCGGCGCGGCGGCTTTGGGATGGGT CGAAGCCGATCGCCGGGACGTTGGCCGCTGCTTATCTTGCATCGCGTGGGATCGATATCGACCCAGGCAATGGTGCCATC CGCTTTCATCCGCGCTGCCATTACCGGGCATCAAGCGATGACCCGCCCGATGTCCGTCCCGCCTGGCCGGCCATGATCGC TGCGGTAACCGATGACGCCGGTCAAATCTCCGGCGTTCATCGCACCTGGCTCGATCCGGCGAGCGGCAAGGCGCCCGTCG CCTGTCCCCGCCGCGCGATGGGGAATCTGCTTGGGCATGGCGTGCGGTTCGGACCTGCTGCGGACGTCATGGCCGCTGGC GAAGGTATCGAGACGCTCCTGTCGCTACGCGAGCTGATGCCGGACATGCCGATGATCGCCGGTCTGTCGGCGGCGCATCT CGCCGCCATCCACTTCCCCCAACCGCTGCGCCGTCTCTATGTTGCGCGCGACAATGACGCGGCCGGGTCCTGGGCGATGA AGACCTTGATTGAGCGCGCCGAACCGCTCGGGATCGCGATCGTCCCGCTCGATCCGCGGCTCGACGATTTAAACAGCGAT CTCGTTCGGACGGGCCGGGAAGAAATGGCGGCTCGGCTTCGCGCCCTGATGCTGCCGCTCGATGCGGTGCGCTTCCTTGT CCGAAAAACATAG
Upstream 100 bases:
>100_bases CGCGCTGGCAGGGGCTGCCGGTGCCGAGCTGTCCGTGCGGATCGCCGATCGCCTTTTGATCGACATCTGCGCGGGCGCAA GGCCTTGGAAGGAGCCCCGC
Downstream 100 bases:
>100_bases CGGGATTTCGGACGGCGGTGGGCGCCGCTTCATCAAGCGTCCGACCGGGTTGCCTCTGGATCATTCCCGGCAGCCGTGCC TCCGGCCTTCGCTGGGGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Conjugative Transfer Protein TraI; P-Loop ATPase And Inactivated Derivative; Genomic Island Protein; Helicase Domain Protein
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD LVRTGREEMAARLRALMLPLDAVRFLVRKT
Sequences:
>Translated_350_residues MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD LVRTGREEMAARLRALMLPLDAVRFLVRKT >Mature_350_residues MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGRAGKWTDAASGEHGDLLDVIA ASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKASTGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAI RFHPRCHYRASSDDPPDVRPAWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERAEPLGIAIVPLDPRLDDLNSD LVRTGREEMAARLRALMLPLDAVRFLVRKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37677; Mature: 37677
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGR CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC AGKWTDAASGEHGDLLDVIAASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKAS CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAIRFHPRCHYRASSDDPPDVRP CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCC AWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG CHHHHHHHHCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCC EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERA CHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC EPLGIAIVPLDPRLDDLNSDLVRTGREEMAARLRALMLPLDAVRFLVRKT CCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure MESPARELARRLADNAEAVCRHYLPNGRREGRYWLVGDVRGTPGRSLYLLLSSSGDGRGR CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC AGKWTDAASGEHGDLLDVIAASCGHAELRETLAEARRFLSMPMSMPQPAGSRSPRSRKAS CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TGTPAAARRLWDGSKPIAGTLAAAYLASRGIDIDPGNGAIRFHPRCHYRASSDDPPDVRP CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCC AWPAMIAAVTDDAGQISGVHRTWLDPASGKAPVACPRRAMGNLLGHGVRFGPAADVMAAG CHHHHHHHHCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCC EGIETLLSLRELMPDMPMIAGLSAAHLAAIHFPQPLRRLYVARDNDAAGSWAMKTLIERA CHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC EPLGIAIVPLDPRLDDLNSDLVRTGREEMAARLRALMLPLDAVRFLVRKT CCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA