| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487995
Identifier: 103487995
GI number: 103487995
Start: 2651561
End: 2652502
Strand: Reverse
Name: 103487995
Synonym: Sala_2516
Alternate gene names: NA
Gene position: 2652502-2651561 (Counterclockwise)
Preceding gene: 103487996
Following gene: 103487994
Centisome position: 79.29
GC content: 66.77
Gene sequence:
>942_bases ATGAGCGACCTGTCAGACTTTTCCGAACGCAGCGAGCCCGCCGAGCCCGGCGCCAGCGCATATCTCCTCCAGGAAATGCA GCTCTACGGCTATCGTCCGTTCGAGGATGAGCCCGACGGGCGGCCGCTTCCCGATGACCGGCTCGCCGGCGGCGCCGTTG CCGACATCTTCGATGCACTCGCGGGCTGCCTCGTCGACACGAGAATCGAGCCCGACCTTGAGGAACTGCTCTGGGGCGTC GTCAATCTCTTCCACGGCGCGGGCACGCGGATCGAGCGCGATCTCGACCGCAACGAGGTGGCGCAGCGAGATCTCCAGCG CGAACAGGATGGCAGCGAAATCCGCTCGGTCGAACTCGAGCGCGCGATCGCCGAGGGCATCACCTTGATCGAGCGGCGCG ACGCCATGGAATTTTTCCGCGAATGCGCCGCTGAACAGTATCGCATTCACGCCCGCAAGGCGTGGGTCCCGCGCACCGGG TCGCGCATCCGCCATCAGGCGATGACCGCGGCAATAATCGACAGCCGCGACTTCATGGACCGCCGCCTCCGCGAAAAGGC CAAGGCGCTGATCCCCGAGGGCACCCGCATCGCCTTCAGCGGTGGGCCCGCGTGCAACGATCACCGGCATATCTGGTCGG CACTCGACAAGGTTCATGCCCGTCATGCCGACATGATATTGCTCCACGGCGCGACGCCGACCGGTGCCGAGCGTGCCGCC GCCTGCTGGGCCGACGCCCGCAAGGTGCCGCAGGTGGCCTTCCGCCCCGACTGGAACCGCGACAGGAAGGCGGCTCCCTT CAAGCGCAACGAGCGCATGATCGACGCCATGCCCGCCGGGCTCATCGTCTTCTCGGGCACCGGCATCCAGGACAATCTCG TCGACAAGGCGCGGGCGTTCGGCATCCCCGTGTGGGATTTCCGCATCCGCGAAGCGCCATGA
Upstream 100 bases:
>100_bases TTCGGCCGCGCGTGCCGCGCGGTGCCGACCCGCACCCGCCGCCGCGGGGGCGTCGCCGCGAAGGCCGCGAGAGCCGCGGC CACCAGAAGCGAGGCATGAC
Downstream 100 bases:
>100_bases GGTTTCGATCTGGACCCGACCATGCTTGCCATCGGGCGAGCTTGTGACCACAGAAGGAAGGAACGATGCGTACCGATCTC GATCATCTTCCGGCCAACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGV VNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTG SRIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP
Sequences:
>Translated_313_residues MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGV VNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTG SRIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP >Mature_312_residues SDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGVV NLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGS RIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAAA CWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35297; Mature: 35166
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDAL CCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHH AGCLVDTRIEPDLEELLWGVVNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELE HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH RAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGSRIRHQAMTAAIIDSRDFMD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH RRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAF HHHHHHHHCCCEEECCCCCCCCCCCCCHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHH GIPVWDFRIREAP CCCEEECEECCCC >Mature Secondary Structure SDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDAL CCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHH AGCLVDTRIEPDLEELLWGVVNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELE HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH RAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGSRIRHQAMTAAIIDSRDFMD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH RRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAF HHHHHHHHCCCEEECCCCCCCCCCCCCHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHH GIPVWDFRIREAP CCCEEECEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA