Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487995

Identifier: 103487995

GI number: 103487995

Start: 2651561

End: 2652502

Strand: Reverse

Name: 103487995

Synonym: Sala_2516

Alternate gene names: NA

Gene position: 2652502-2651561 (Counterclockwise)

Preceding gene: 103487996

Following gene: 103487994

Centisome position: 79.29

GC content: 66.77

Gene sequence:

>942_bases
ATGAGCGACCTGTCAGACTTTTCCGAACGCAGCGAGCCCGCCGAGCCCGGCGCCAGCGCATATCTCCTCCAGGAAATGCA
GCTCTACGGCTATCGTCCGTTCGAGGATGAGCCCGACGGGCGGCCGCTTCCCGATGACCGGCTCGCCGGCGGCGCCGTTG
CCGACATCTTCGATGCACTCGCGGGCTGCCTCGTCGACACGAGAATCGAGCCCGACCTTGAGGAACTGCTCTGGGGCGTC
GTCAATCTCTTCCACGGCGCGGGCACGCGGATCGAGCGCGATCTCGACCGCAACGAGGTGGCGCAGCGAGATCTCCAGCG
CGAACAGGATGGCAGCGAAATCCGCTCGGTCGAACTCGAGCGCGCGATCGCCGAGGGCATCACCTTGATCGAGCGGCGCG
ACGCCATGGAATTTTTCCGCGAATGCGCCGCTGAACAGTATCGCATTCACGCCCGCAAGGCGTGGGTCCCGCGCACCGGG
TCGCGCATCCGCCATCAGGCGATGACCGCGGCAATAATCGACAGCCGCGACTTCATGGACCGCCGCCTCCGCGAAAAGGC
CAAGGCGCTGATCCCCGAGGGCACCCGCATCGCCTTCAGCGGTGGGCCCGCGTGCAACGATCACCGGCATATCTGGTCGG
CACTCGACAAGGTTCATGCCCGTCATGCCGACATGATATTGCTCCACGGCGCGACGCCGACCGGTGCCGAGCGTGCCGCC
GCCTGCTGGGCCGACGCCCGCAAGGTGCCGCAGGTGGCCTTCCGCCCCGACTGGAACCGCGACAGGAAGGCGGCTCCCTT
CAAGCGCAACGAGCGCATGATCGACGCCATGCCCGCCGGGCTCATCGTCTTCTCGGGCACCGGCATCCAGGACAATCTCG
TCGACAAGGCGCGGGCGTTCGGCATCCCCGTGTGGGATTTCCGCATCCGCGAAGCGCCATGA

Upstream 100 bases:

>100_bases
TTCGGCCGCGCGTGCCGCGCGGTGCCGACCCGCACCCGCCGCCGCGGGGGCGTCGCCGCGAAGGCCGCGAGAGCCGCGGC
CACCAGAAGCGAGGCATGAC

Downstream 100 bases:

>100_bases
GGTTTCGATCTGGACCCGACCATGCTTGCCATCGGGCGAGCTTGTGACCACAGAAGGAAGGAACGATGCGTACCGATCTC
GATCATCTTCCGGCCAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGV
VNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTG
SRIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA
ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP

Sequences:

>Translated_313_residues
MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGV
VNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTG
SRIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA
ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP
>Mature_312_residues
SDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDALAGCLVDTRIEPDLEELLWGVV
NLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELERAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGS
RIRHQAMTAAIIDSRDFMDRRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAAA
CWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAFGIPVWDFRIREAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35297; Mature: 35166

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDAL
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHH
AGCLVDTRIEPDLEELLWGVVNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELE
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH
RAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGSRIRHQAMTAAIIDSRDFMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
RRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA
HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAF
HHHHHHHHCCCEEECCCCCCCCCCCCCHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHH
GIPVWDFRIREAP
CCCEEECEECCCC
>Mature Secondary Structure 
SDLSDFSERSEPAEPGASAYLLQEMQLYGYRPFEDEPDGRPLPDDRLAGGAVADIFDAL
CCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHH
AGCLVDTRIEPDLEELLWGVVNLFHGAGTRIERDLDRNEVAQRDLQREQDGSEIRSVELE
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH
RAIAEGITLIERRDAMEFFRECAAEQYRIHARKAWVPRTGSRIRHQAMTAAIIDSRDFMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
RRLREKAKALIPEGTRIAFSGGPACNDHRHIWSALDKVHARHADMILLHGATPTGAERAA
HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
ACWADARKVPQVAFRPDWNRDRKAAPFKRNERMIDAMPAGLIVFSGTGIQDNLVDKARAF
HHHHHHHHCCCEEECCCCCCCCCCCCCHHCCHHHHHCCCCEEEEECCCCCHHHHHHHHHH
GIPVWDFRIREAP
CCCEEECEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA