| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487982
Identifier: 103487982
GI number: 103487982
Start: 2639246
End: 2639809
Strand: Reverse
Name: 103487982
Synonym: Sala_2503
Alternate gene names: NA
Gene position: 2639809-2639246 (Counterclockwise)
Preceding gene: 103487983
Following gene: 103487981
Centisome position: 78.91
GC content: 65.78
Gene sequence:
>564_bases ATGCAGGTCGCCGCCGCCTATCTCGAGGCGAAGGATGTGAGCATCCAGCCCGGAACGACGCCGGCGCGCCAGCGCACCTT CCACGAACTTTTCGCCCAGCATGTCACGACGCCGCTCGGGATGACGAGCACGACATGGTATGATCCGGCGGGCAGCGCAC CGACGAATCCGTGGGTGGCGGGGGGCGCCTATTCGACCCCGCGCGACTATGCCAAGCTGCTGCGTGCGCTCCTCGGCGGC GCCTTTGTGACCGACATGACCGCCTTTACTCAGCCGCGCACGACCGGCCTGCCGCGCGTCTTCGTACCCTCGGGAGCCTC GAACTGGGAATATGCGCTGGGCTCCTTCGTCGAATGCGACACCCCCTCGGCCTGCGCGACGTCGATGATCAATTCGGCGC CGGGCGCTTATGGATGGACGGGCTGGATCGATCGCGGAACCGGCTATTACGGCCTGATCGCGACCGAGATTTCGAGCGGC GGAGATCGTAAGGGCACCGAACTGGAACAGGAGATGCAGGGCCTGATCGAAGCGGCTATCGCGAGCCGCGTGCCTGCGCC TTAA
Upstream 100 bases:
>100_bases GATCCTGTACAATTGCGCGAAAAATATCCACGACCTGTGATACGACATCCTGCGTCCCGGCAACGCGCCGGGTGCGCAAT ATAGCTATGGCCCGCACGGG
Downstream 100 bases:
>100_bases AATCTTGTTCGCAGCGCTTTTGGTTCGAGTGTCTGCTTCTCCAGATTTCGAACCAAAAGTTGCCTGACCGTAATCGGCCA ATTTCGCAGGGGCTTCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MQVAAAYLEAKDVSIQPGTTPARQRTFHELFAQHVTTPLGMTSTTWYDPAGSAPTNPWVAGGAYSTPRDYAKLLRALLGG AFVTDMTAFTQPRTTGLPRVFVPSGASNWEYALGSFVECDTPSACATSMINSAPGAYGWTGWIDRGTGYYGLIATEISSG GDRKGTELEQEMQGLIEAAIASRVPAP
Sequences:
>Translated_187_residues MQVAAAYLEAKDVSIQPGTTPARQRTFHELFAQHVTTPLGMTSTTWYDPAGSAPTNPWVAGGAYSTPRDYAKLLRALLGG AFVTDMTAFTQPRTTGLPRVFVPSGASNWEYALGSFVECDTPSACATSMINSAPGAYGWTGWIDRGTGYYGLIATEISSG GDRKGTELEQEMQGLIEAAIASRVPAP >Mature_187_residues MQVAAAYLEAKDVSIQPGTTPARQRTFHELFAQHVTTPLGMTSTTWYDPAGSAPTNPWVAGGAYSTPRDYAKLLRALLGG AFVTDMTAFTQPRTTGLPRVFVPSGASNWEYALGSFVECDTPSACATSMINSAPGAYGWTGWIDRGTGYYGLIATEISSG GDRKGTELEQEMQGLIEAAIASRVPAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19846; Mature: 19846
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVAAAYLEAKDVSIQPGTTPARQRTFHELFAQHVTTPLGMTSTTWYDPAGSAPTNPWVA CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GGAYSTPRDYAKLLRALLGGAFVTDMTAFTQPRTTGLPRVFVPSGASNWEYALGSFVECD CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHCCEECCC TPSACATSMINSAPGAYGWTGWIDRGTGYYGLIATEISSGGDRKGTELEQEMQGLIEAAI CCHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH ASRVPAP HHCCCCC >Mature Secondary Structure MQVAAAYLEAKDVSIQPGTTPARQRTFHELFAQHVTTPLGMTSTTWYDPAGSAPTNPWVA CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GGAYSTPRDYAKLLRALLGGAFVTDMTAFTQPRTTGLPRVFVPSGASNWEYALGSFVECD CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHCCEECCC TPSACATSMINSAPGAYGWTGWIDRGTGYYGLIATEISSGGDRKGTELEQEMQGLIEAAI CCHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH ASRVPAP HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA