Click here to switch to the map view.

The map label for this gene is yggB [C]

Identifier: 103487641

GI number: 103487641

Start: 2271219

End: 2272421

Strand: Direct

Name: yggB [C]

Synonym: Sala_2160

Alternate gene names: 103487641

Gene position: 2271219-2272421 (Clockwise)

Preceding gene: 103487635

Following gene: 103487642

Centisome position: 67.9

GC content: 63.51

Gene sequence:

>1203_bases
ATGACCGTCACGATCCCGACCGCCGCCCCGACTGCCGCCGCAAAGGCGGCGCGCGCCAAAACCGATGCCGCCACCAGCAA
TCCGCTCGCCGACATGCGCGACTGGTGGGACAGCAGCGTCGCCTGGGTGAACAGCCACTGGCTGGAAATCGGGATCGCGG
TGGCGCTTGGCCTCGTCATCTATGTCCTGCTCTCGATGATCCGCCGTATCGCGCTGAGGCGCGCGCAGGCGGCGCCGGGC
GAGTTCACGCTCACCGACATCGTCGGCCGCGTGATCCACAAGACGAAGTCGCTCGTGCTGGCAATCATCGCCGTGCGGCT
GGTCGCGGGTTATGCGCAGCCGCCGGCCCTGTTCATGCAGGCCATCCATTTCGCCTTCACCGTCGCCGTCGTGTTGCAGG
CCGCGATATGGGCACGCGAAATCATCCTCGGCCTCATCCAGCGCCGCGCTGCCGAAGGCCATAATGAAACGCTCAGCAAC
GCGATGGGAATCATCCGGCTGCTCATCAGCGTCGCACTTTTCGCGGTCGCCGCCATCGTCATCCTCGACAATATGGGGGT
CAATGTCACCGGGCTGGTCGCGGGCCTCGGCATCGGCGGCATCGCGATCGGCCTTGCCGCGCAGGGCATTTTTTCCGATC
TGTTCGCGTCGCTGTCGATCATCTTCGATCGGCCGTTCCGCGTCGGCGAGACGATCAAATATGACACGAGCACCGCAACC
GTCGAACGGATTGGCCTGAAAAGCACGCGCCTGCGCTCGATAAACGGCGAGTTGCTCGTCATTTCGAACACCAATCTGCT
CGCCAAGGAAATCACCAATTACGCGCATCTGCACCGCCGCCGCGTGACCTTCATGATCGGCGTCGTCTATCAGACCACGC
CGACGATGCTGCGCGACCTTCCTGCGCTGCTCGAGGAGCAGGTGAACGCCGCAGGCCATGCGTTTGTTCGTTCCAGCTTT
GTCGCTTTCGGCCCGTCCAGCCTCGACTTCGAACTGCTCTTCGACGTGTTCAGCGATGATTATGACGTCGTGACCGCCGC
GCGCACCGACGTCGCGATCCGCCTGTTCGAAGCGATGACCGCGGCGGGTTACAGCTTTGCCTATCCGACGCAGACAACCT
TCACCGCGGCGCCCGACGGCCGCATGATTCTCCCCTATGCCGAAAGCGTGACGATGAAGGCGCCAGACCCTGCCGATGGC
TGA

Upstream 100 bases:

>100_bases
TCGCGTTACGCGCGCGGATTTTTGACCTATCTGGAGTGCGTGCCCGATACGGGCCAAAGCTTCGTCCCATCGATCGACCA
AGAGGACCAACAGGCCCCGC

Downstream 100 bases:

>100_bases
CGCTACGGCGCCTTGGTCAAAGCCCTTGGCCCTTGTGCAACGCGGCAGGAGAGGCCTAGAACGCGCCCCGAAGCAGCATA
GAGGGGATGACAAATGGCCA

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTVTIPTAAPTAAAKAARAKTDAATSNPLADMRDWWDSSVAWVNSHWLEIGIAVALGLVIYVLLSMIRRIALRRAQAAPG
EFTLTDIVGRVIHKTKSLVLAIIAVRLVAGYAQPPALFMQAIHFAFTVAVVLQAAIWAREIILGLIQRRAAEGHNETLSN
AMGIIRLLISVALFAVAAIVILDNMGVNVTGLVAGLGIGGIAIGLAAQGIFSDLFASLSIIFDRPFRVGETIKYDTSTAT
VERIGLKSTRLRSINGELLVISNTNLLAKEITNYAHLHRRRVTFMIGVVYQTTPTMLRDLPALLEEQVNAAGHAFVRSSF
VAFGPSSLDFELLFDVFSDDYDVVTAARTDVAIRLFEAMTAAGYSFAYPTQTTFTAAPDGRMILPYAESVTMKAPDPADG

Sequences:

>Translated_400_residues
MTVTIPTAAPTAAAKAARAKTDAATSNPLADMRDWWDSSVAWVNSHWLEIGIAVALGLVIYVLLSMIRRIALRRAQAAPG
EFTLTDIVGRVIHKTKSLVLAIIAVRLVAGYAQPPALFMQAIHFAFTVAVVLQAAIWAREIILGLIQRRAAEGHNETLSN
AMGIIRLLISVALFAVAAIVILDNMGVNVTGLVAGLGIGGIAIGLAAQGIFSDLFASLSIIFDRPFRVGETIKYDTSTAT
VERIGLKSTRLRSINGELLVISNTNLLAKEITNYAHLHRRRVTFMIGVVYQTTPTMLRDLPALLEEQVNAAGHAFVRSSF
VAFGPSSLDFELLFDVFSDDYDVVTAARTDVAIRLFEAMTAAGYSFAYPTQTTFTAAPDGRMILPYAESVTMKAPDPADG
>Mature_399_residues
TVTIPTAAPTAAAKAARAKTDAATSNPLADMRDWWDSSVAWVNSHWLEIGIAVALGLVIYVLLSMIRRIALRRAQAAPGE
FTLTDIVGRVIHKTKSLVLAIIAVRLVAGYAQPPALFMQAIHFAFTVAVVLQAAIWAREIILGLIQRRAAEGHNETLSNA
MGIIRLLISVALFAVAAIVILDNMGVNVTGLVAGLGIGGIAIGLAAQGIFSDLFASLSIIFDRPFRVGETIKYDTSTATV
ERIGLKSTRLRSINGELLVISNTNLLAKEITNYAHLHRRRVTFMIGVVYQTTPTMLRDLPALLEEQVNAAGHAFVRSSFV
AFGPSSLDFELLFDVFSDDYDVVTAARTDVAIRLFEAMTAAGYSFAYPTQTTFTAAPDGRMILPYAESVTMKAPDPADG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=269, Percent_Identity=30.8550185873606, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787591, Length=223, Percent_Identity=25.5605381165919, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 43077; Mature: 42945

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTIPTAAPTAAAKAARAKTDAATSNPLADMRDWWDSSVAWVNSHWLEIGIAVALGLVI
CEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YVLLSMIRRIALRRAQAAPGEFTLTDIVGRVIHKTKSLVLAIIAVRLVAGYAQPPALFMQ
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AIHFAFTVAVVLQAAIWAREIILGLIQRRAAEGHNETLSNAMGIIRLLISVALFAVAAIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDNMGVNVTGLVAGLGIGGIAIGLAAQGIFSDLFASLSIIFDRPFRVGETIKYDTSTAT
HHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
VERIGLKSTRLRSINGELLVISNTNLLAKEITNYAHLHRRRVTFMIGVVYQTTPTMLRDL
HHHHCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHH
PALLEEQVNAAGHAFVRSSFVAFGPSSLDFELLFDVFSDDYDVVTAARTDVAIRLFEAMT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH
AAGYSFAYPTQTTFTAAPDGRMILPYAESVTMKAPDPADG
HCCCEEECCCCCEEEECCCCCEEEEECCCEEECCCCCCCC
>Mature Secondary Structure 
TVTIPTAAPTAAAKAARAKTDAATSNPLADMRDWWDSSVAWVNSHWLEIGIAVALGLVI
EEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YVLLSMIRRIALRRAQAAPGEFTLTDIVGRVIHKTKSLVLAIIAVRLVAGYAQPPALFMQ
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AIHFAFTVAVVLQAAIWAREIILGLIQRRAAEGHNETLSNAMGIIRLLISVALFAVAAIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDNMGVNVTGLVAGLGIGGIAIGLAAQGIFSDLFASLSIIFDRPFRVGETIKYDTSTAT
HHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
VERIGLKSTRLRSINGELLVISNTNLLAKEITNYAHLHRRRVTFMIGVVYQTTPTMLRDL
HHHHCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHH
PALLEEQVNAAGHAFVRSSFVAFGPSSLDFELLFDVFSDDYDVVTAARTDVAIRLFEAMT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH
AAGYSFAYPTQTTFTAAPDGRMILPYAESVTMKAPDPADG
HCCCEEECCCCCEEEECCCCCEEEEECCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]