| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487600
Identifier: 103487600
GI number: 103487600
Start: 2225942
End: 2226631
Strand: Direct
Name: 103487600
Synonym: Sala_2119
Alternate gene names: NA
Gene position: 2225942-2226631 (Clockwise)
Preceding gene: 103487599
Following gene: 103487601
Centisome position: 66.54
GC content: 70.58
Gene sequence:
>690_bases ATGCACGAGGAAAATCACGCGGTCACGCGCATCGGCTGGCTACGGGCGGCGATCCTGGGCGCCAACGACGGGATCGTCTC GACGGCAAGCCTGATCGCGGGCGTCGCGGCGGCGGGCGCGTCGGAAGCGTCGATCCTCATCACCGGCAGCGCCGGGCTCG TCGCGGGCGCGATGTCGATGGCGGCGGGCGAATATGTCTCGGTCAGCTCGCAGGGCGACGCCGAAAAGGCCGATGTCGAA CTGGAGAGACGGCACCTTGCCGCGGACCCGGAGTTCGAGCTGGAAGAGCTGACGCAAATCTATGAGGCGCGCGGGCTCGA CCGGCTGCTCGCCGAACAGGTCGCGGTGCAGCTGACCGCGCACGACGCGCTCGACACGCATTTGCGCGACGAGTTGGGGA TGAGCGCGGTATCCGCAGCGCGGCCGATTCAGGCGGCGGCGGCATCGGCGGCGAGCTTTTCGGTCGGCGCGGCGCTGCCG CTCGCGACGGTGCTGCTCGACCGCGGCACGTCGCTGCCATGGACGGTGTCGGCGGCGTCGCTCGCCTTCCTCGCGATCCT TGGCGCGCTGGGCGCATGGGCGGGGCAAGCACCGATGGTGCGCGCGGTCGTCCGCGTGACCTTTTGGGGCGCCTTTGCGA TGGCCGCGACGATCGCGATCGGGTCGCTGCTCGGCACGACGGTGGGTTGA
Upstream 100 bases:
>100_bases GACCGGCAGGATGCCTATATCACCCTGTCGGGAACCGGAAGACTGGTGAAGACACGCTGGACGCGGCCGGGATTGCCGTT GCCATATTGAGAGGGCCGCG
Downstream 100 bases:
>100_bases GACCGGCGGCGATTGTCAGCGGCGCCCCCATCTGTATGACTGGCGACCGGCCCGCGTCCGCGGGAAAAGCAATCGGAGGG GTCCGCAATGAACGCAAACC
Product: hypothetical protein
Products: NA
Alternate protein names: Nodulin; Nodulin-Related Protein; Iron And Manganese Transporter; Nodulin-Like Protein-Like Protein; Transmembrane Protein; Nodulin-Related Transmembrane Protein; Nodulin- Domain-Containing Protein; Nodulin-Related Integral Membrane Protein DUF; Mebrane Associated Protein DUF; Nodulin-
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues MHEENHAVTRIGWLRAAILGANDGIVSTASLIAGVAAAGASEASILITGSAGLVAGAMSMAAGEYVSVSSQGDAEKADVE LERRHLAADPEFELEELTQIYEARGLDRLLAEQVAVQLTAHDALDTHLRDELGMSAVSAARPIQAAAASAASFSVGAALP LATVLLDRGTSLPWTVSAASLAFLAILGALGAWAGQAPMVRAVVRVTFWGAFAMAATIAIGSLLGTTVG
Sequences:
>Translated_229_residues MHEENHAVTRIGWLRAAILGANDGIVSTASLIAGVAAAGASEASILITGSAGLVAGAMSMAAGEYVSVSSQGDAEKADVE LERRHLAADPEFELEELTQIYEARGLDRLLAEQVAVQLTAHDALDTHLRDELGMSAVSAARPIQAAAASAASFSVGAALP LATVLLDRGTSLPWTVSAASLAFLAILGALGAWAGQAPMVRAVVRVTFWGAFAMAATIAIGSLLGTTVG >Mature_229_residues MHEENHAVTRIGWLRAAILGANDGIVSTASLIAGVAAAGASEASILITGSAGLVAGAMSMAAGEYVSVSSQGDAEKADVE LERRHLAADPEFELEELTQIYEARGLDRLLAEQVAVQLTAHDALDTHLRDELGMSAVSAARPIQAAAASAASFSVGAALP LATVLLDRGTSLPWTVSAASLAFLAILGALGAWAGQAPMVRAVVRVTFWGAFAMAATIAIGSLLGTTVG
Specific function: Unknown
COG id: COG1814
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23260; Mature: 23260
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHEENHAVTRIGWLRAAILGANDGIVSTASLIAGVAAAGASEASILITGSAGLVAGAMSM CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH AAGEYVSVSSQGDAEKADVELERRHLAADPEFELEELTQIYEARGLDRLLAEQVAVQLTA HCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH HDALDTHLRDELGMSAVSAARPIQAAAASAASFSVGAALPLATVLLDRGTSLPWTVSAAS HHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH LAFLAILGALGAWAGQAPMVRAVVRVTFWGAFAMAATIAIGSLLGTTVG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHEENHAVTRIGWLRAAILGANDGIVSTASLIAGVAAAGASEASILITGSAGLVAGAMSM CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH AAGEYVSVSSQGDAEKADVELERRHLAADPEFELEELTQIYEARGLDRLLAEQVAVQLTA HCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH HDALDTHLRDELGMSAVSAARPIQAAAASAASFSVGAALPLATVLLDRGTSLPWTVSAAS HHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH LAFLAILGALGAWAGQAPMVRAVVRVTFWGAFAMAATIAIGSLLGTTVG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA