| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487601
Identifier: 103487601
GI number: 103487601
Start: 2226719
End: 2227825
Strand: Direct
Name: 103487601
Synonym: Sala_2120
Alternate gene names: NA
Gene position: 2226719-2227825 (Clockwise)
Preceding gene: 103487600
Following gene: 103487602
Centisome position: 66.57
GC content: 67.12
Gene sequence:
>1107_bases ATGAACGCAAACCGCTGGGCGATCGACATCGATCGCGACGATATCACGCAAGCCCGATTGGTCGAGGAAGCCCGCGAGCC GCTCGCGCCGGGTCAGGTGCGCGTGCATCTCGACAGCTATGCAATGACCGCGAACAACATCACTTATGCGGTGTTCGGCC AGCCGGCGGGCCTGTTCGGCAACGACCAGGGCTATTGGGATTTCTTTTCCGAACCGGGCGCCCCTGGCCGCCTGCCGGTG TGGGGTTTCGCGACAGTGACCGAAAGCGCGGTCGAGGGCGTCGCGGCGGGCGAGCGTTTCTATGGCTATTATCCGATGGC GAGCGATGCGGTGCTGACCGTGGGCAAGGCCGGGCCGGGCGGATTTACCGACGTGACGCCACGGCGCACCACCCTGCCCC CGATCTATAACCAGTATCAGCGGATCGAGGCGCTGGAGGGCTATCGCGCCGCCGACCATGATTATTGGCCGGTGTTCCGC CCGCTGTTCCTGACCGGCTGGCTGATCGCTGACCAGTTCGCGGACGAGGGCGATTATGGCGCCGACCAGATCCTGATCGC CAGCGCGTCGAGCAAGACCGCGATCGGCCTGGGCTTCACATTGAAGCAGCGGCCCGAACCGCGCCCCGAAACGGTCGGCC TGACCAGCGCGGCCAATGTCGAGGCGCTCGCCGCGCAGGGCATTTACGACCGGGTGATCAGCTATGACCAGATCATGACG CTCAACGCCGCCGCCCCCGCGGCGCTGGTCGACATGGCAGGCAATGGCGCGGTGACGCGCGTCGTGCACAGCCATTTCGG AAACAACCTCATGGCCTCCATCGTCGTCGGCAAGTCGCACTGGGATGCGCAGGCCGACGTCGAAGGCCTGCCCGGCCCCC AGCGGCAGGGTTTCTTCGCGCCCGGCCGCAGCCAGAAGCGCATCGCCGACTGGGGCGGGGCAGCCTTCGGTGCGAAGATC GCCGAGGCCTGGACCGCCTTCATGGACGTTGCCCCGCGGCTGGCGGCGATCGACACGCGCAAGGGCGGCGAAGCCGCGCT CGCCGCCTATCGCGAGATGCTGTCAGGCGCAGCCGACCCGCGGAAGGGAATCGTCGTCGTGCCATGA
Upstream 100 bases:
>100_bases GACGGTGGGTTGAGACCGGCGGCGATTGTCAGCGGCGCCCCCATCTGTATGACTGGCGACCGGCCCGCGTCCGCGGGAAA AGCAATCGGAGGGGTCCGCA
Downstream 100 bases:
>100_bases CCTACACCACCGTCATTTTCGATTTCGGCGGCGTCATCACCGCCTCGCCCTTCGAGGCATTCAACCGGCTGGAGGCCGAG CGCGGGCTGCCGCGCGATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MNANRWAIDIDRDDITQARLVEEAREPLAPGQVRVHLDSYAMTANNITYAVFGQPAGLFGNDQGYWDFFSEPGAPGRLPV WGFATVTESAVEGVAAGERFYGYYPMASDAVLTVGKAGPGGFTDVTPRRTTLPPIYNQYQRIEALEGYRAADHDYWPVFR PLFLTGWLIADQFADEGDYGADQILIASASSKTAIGLGFTLKQRPEPRPETVGLTSAANVEALAAQGIYDRVISYDQIMT LNAAAPAALVDMAGNGAVTRVVHSHFGNNLMASIVVGKSHWDAQADVEGLPGPQRQGFFAPGRSQKRIADWGGAAFGAKI AEAWTAFMDVAPRLAAIDTRKGGEAALAAYREMLSGAADPRKGIVVVP
Sequences:
>Translated_368_residues MNANRWAIDIDRDDITQARLVEEAREPLAPGQVRVHLDSYAMTANNITYAVFGQPAGLFGNDQGYWDFFSEPGAPGRLPV WGFATVTESAVEGVAAGERFYGYYPMASDAVLTVGKAGPGGFTDVTPRRTTLPPIYNQYQRIEALEGYRAADHDYWPVFR PLFLTGWLIADQFADEGDYGADQILIASASSKTAIGLGFTLKQRPEPRPETVGLTSAANVEALAAQGIYDRVISYDQIMT LNAAAPAALVDMAGNGAVTRVVHSHFGNNLMASIVVGKSHWDAQADVEGLPGPQRQGFFAPGRSQKRIADWGGAAFGAKI AEAWTAFMDVAPRLAAIDTRKGGEAALAAYREMLSGAADPRKGIVVVP >Mature_368_residues MNANRWAIDIDRDDITQARLVEEAREPLAPGQVRVHLDSYAMTANNITYAVFGQPAGLFGNDQGYWDFFSEPGAPGRLPV WGFATVTESAVEGVAAGERFYGYYPMASDAVLTVGKAGPGGFTDVTPRRTTLPPIYNQYQRIEALEGYRAADHDYWPVFR PLFLTGWLIADQFADEGDYGADQILIASASSKTAIGLGFTLKQRPEPRPETVGLTSAANVEALAAQGIYDRVISYDQIMT LNAAAPAALVDMAGNGAVTRVVHSHFGNNLMASIVVGKSHWDAQADVEGLPGPQRQGFFAPGRSQKRIADWGGAAFGAKI AEAWTAFMDVAPRLAAIDTRKGGEAALAAYREMLSGAADPRKGIVVVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39516; Mature: 39516
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNANRWAIDIDRDDITQARLVEEAREPLAPGQVRVHLDSYAMTANNITYAVFGQPAGLFG CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECEEEEECCEEEEEECCCCCCCC NDQGYWDFFSEPGAPGRLPVWGFATVTESAVEGVAAGERFYGYYPMASDAVLTVGKAGPG CCCCCCHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCC GFTDVTPRRTTLPPIYNQYQRIEALEGYRAADHDYWPVFRPLFLTGWLIADQFADEGDYG CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC ADQILIASASSKTAIGLGFTLKQRPEPRPETVGLTSAANVEALAAQGIYDRVISYDQIMT CCEEEEEECCCCCEEEECEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE LNAAAPAALVDMAGNGAVTRVVHSHFGNNLMASIVVGKSHWDAQADVEGLPGPQRQGFFA ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC PGRSQKRIADWGGAAFGAKIAEAWTAFMDVAPRLAAIDTRKGGEAALAAYREMLSGAADP CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHCCCCCC RKGIVVVP CCCEEEEC >Mature Secondary Structure MNANRWAIDIDRDDITQARLVEEAREPLAPGQVRVHLDSYAMTANNITYAVFGQPAGLFG CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECEEEEECCEEEEEECCCCCCCC NDQGYWDFFSEPGAPGRLPVWGFATVTESAVEGVAAGERFYGYYPMASDAVLTVGKAGPG CCCCCCHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCC GFTDVTPRRTTLPPIYNQYQRIEALEGYRAADHDYWPVFRPLFLTGWLIADQFADEGDYG CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC ADQILIASASSKTAIGLGFTLKQRPEPRPETVGLTSAANVEALAAQGIYDRVISYDQIMT CCEEEEEECCCCCEEEECEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE LNAAAPAALVDMAGNGAVTRVVHSHFGNNLMASIVVGKSHWDAQADVEGLPGPQRQGFFA ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC PGRSQKRIADWGGAAFGAKIAEAWTAFMDVAPRLAAIDTRKGGEAALAAYREMLSGAADP CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHCCCCCC RKGIVVVP CCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA