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The map label for this gene is yciR [C]

Identifier: 103487590

GI number: 103487590

Start: 2216760

End: 2218472

Strand: Direct

Name: yciR [C]

Synonym: Sala_2109

Alternate gene names: 103487590

Gene position: 2216760-2218472 (Clockwise)

Preceding gene: 103487589

Following gene: 103487595

Centisome position: 66.27

GC content: 65.91

Gene sequence:

>1713_bases
ATGGGGAAAGGTCGCACAAAACCCGCTGTTATGCCTATTGATCGAACCGGCGAAGACCGGCCCTTGCTGTTTGTCGGCTG
GATCGACGCGCTGCCCGTTCCGGCGGCGCTGGTCAGGCCGATGGCGCGCGGCAATTTCCGGCTCCACGCGAGCAATGCCG
CCTTCGACCGACTGAAGCTGTCGCCGGTCGGCGCCGACGCGCCGATCGAGCTTCTGCGCGCAGTCGAACGCGCATCGCAG
CATCCCGACGAGGTGCAGGAGTTTTCGTGCCAGCTCGGCGAGGGACCGGCGGCGCGCGACCTGCGCGGACATATCGGCCC
GCTGCCCACCGAAACGGATGACGACGGGCTGTTCCTGCTGACGCTGATCGATCGCACCCAGGAAATGATGACCGAGCGCA
ATCTGCGCCGCGAGCTGGTGTCCGACAGCCTGACCGGCCTGCCCAACCGCGCCGGGTTCGAGGAGCTGGTCGAACAGCGG
GCGCACCGCGATGCGCCGGGCGCCGATCACGCCATACTGCTGCTCGACCTCGCGCGCTTTTCGCGCATCAACGAACATAT
CGGCCCGATGGCGGGCGACGAGCTGATCATCACCGTCGCACGGCGGTTGAAATCGAGCCTGCGCAGCGGCGACATACTGG
CGCGCACCGGCGGTGACGAATTCGCCATTTCGACACGAATCGCGGGCGGGCGCGCCGATGTGCGCGAAATGGCGCGGCGC
ATCCGCGGCTGTTTCGACCATCCCTTTCGTATCGGCGAACTGAAGGTCAGCGTCGATTGCGCGCTCGGCTGTTCGATCCA
GCCGACCAGCGAGATCGACGTCGCCAACCAGATCCGCCACGCGCAGATCGCGCTCAAGCGGGCGAAGCAGACCGACCGCA
TCGAAATCTATGAACCCGAAGCGGCGATGCTGTCGGACAATCGTTTCGGGCTCGAGACCGAACTGCGCAACGCGATCGAG
GAAGACCGGCTGCATCTCGCCTTCCAGCCGCTCATCGAGATGGCGAGCGGGCGCGTCGCGGGGTTCGAGGCGCTCGCGCG
CTGGGACAATAGCAGCGGGGTCGCGGTGTCACCGACCGAATTCATTCCGATCGCCGAGGATTCGGGGCTGATCGTCCCGC
TGGGCCAATGGGCGATCGGCAAGGCCGCGGCGGTGCTCGCCGACTGGGACCGGCAGAATGGCGGGCAGGTCGTCAACGCC
TATTTCTCGGTCAATGTCTCGGCGATCCAGCTGGTGCGTGACGACGTCGCGGGGGTGGTTCGCCAGGCGCTCCAAAAGCA
TGGCATCGGCGGCGAGCGGCTGATGATCGAGCTGACCGAAAGCGCGATCATCGGCGATCCCGACCTGGCGCTGTCGGTGC
TGCGCGAACTGAAGGCACTCGACGCGCGCGTCGCGATGGACGATTTCGGCACCGGCTATTCGAACCTTGCCTATCTTCAG
CGGCTGCCGATCGACGTGCTCAAGATCGACCGCAGCTTTGTCGAACATATGGTCGACGACCGCGACAAGGTGGCGATCGT
CCGCACGATCCAGAGCCTCGCCGAAGTGCTGGGGATGAAGACCACCGCCGAGGGGGTCGAGACAACCGATCAGGCGCGGC
TGCTGTCGGCGCTCGGCTGCGACTTCGGGCAGGGCTATCTGTTCGCGCGGCCGATGGATGGCAAGGCGGCGCTCGATTAC
TGGCGTCAGTCGCTGACGCGGCCGATCTTCTGA

Upstream 100 bases:

>100_bases
TGCCGCCAACCGGTTTTCCGCGCAACAACCGCTTCGCCTGACCGCAAAAGCGCGTCGCCGTAAATCCCTTCTTTACTCCC
CGCACCCTAGTCATGGGGAA

Downstream 100 bases:

>100_bases
TCGACCAGCTCGGCGACGCGCGCGGCGTCCGGGAAATCTTCGGCCACCCACGCGGCCTCGACCGCCTTCAGGATGCGCGC
CACCTCAGGCCCCGCCGCAA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MGKGRTKPAVMPIDRTGEDRPLLFVGWIDALPVPAALVRPMARGNFRLHASNAAFDRLKLSPVGADAPIELLRAVERASQ
HPDEVQEFSCQLGEGPAARDLRGHIGPLPTETDDDGLFLLTLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVEQR
AHRDAPGADHAILLLDLARFSRINEHIGPMAGDELIITVARRLKSSLRSGDILARTGGDEFAISTRIAGGRADVREMARR
IRGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVANQIRHAQIALKRAKQTDRIEIYEPEAAMLSDNRFGLETELRNAIE
EDRLHLAFQPLIEMASGRVAGFEALARWDNSSGVAVSPTEFIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQVVNA
YFSVNVSAIQLVRDDVAGVVRQALQKHGIGGERLMIELTESAIIGDPDLALSVLRELKALDARVAMDDFGTGYSNLAYLQ
RLPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEVLGMKTTAEGVETTDQARLLSALGCDFGQGYLFARPMDGKAALDY
WRQSLTRPIF

Sequences:

>Translated_570_residues
MGKGRTKPAVMPIDRTGEDRPLLFVGWIDALPVPAALVRPMARGNFRLHASNAAFDRLKLSPVGADAPIELLRAVERASQ
HPDEVQEFSCQLGEGPAARDLRGHIGPLPTETDDDGLFLLTLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVEQR
AHRDAPGADHAILLLDLARFSRINEHIGPMAGDELIITVARRLKSSLRSGDILARTGGDEFAISTRIAGGRADVREMARR
IRGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVANQIRHAQIALKRAKQTDRIEIYEPEAAMLSDNRFGLETELRNAIE
EDRLHLAFQPLIEMASGRVAGFEALARWDNSSGVAVSPTEFIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQVVNA
YFSVNVSAIQLVRDDVAGVVRQALQKHGIGGERLMIELTESAIIGDPDLALSVLRELKALDARVAMDDFGTGYSNLAYLQ
RLPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEVLGMKTTAEGVETTDQARLLSALGCDFGQGYLFARPMDGKAALDY
WRQSLTRPIF
>Mature_569_residues
GKGRTKPAVMPIDRTGEDRPLLFVGWIDALPVPAALVRPMARGNFRLHASNAAFDRLKLSPVGADAPIELLRAVERASQH
PDEVQEFSCQLGEGPAARDLRGHIGPLPTETDDDGLFLLTLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVEQRA
HRDAPGADHAILLLDLARFSRINEHIGPMAGDELIITVARRLKSSLRSGDILARTGGDEFAISTRIAGGRADVREMARRI
RGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVANQIRHAQIALKRAKQTDRIEIYEPEAAMLSDNRFGLETELRNAIEE
DRLHLAFQPLIEMASGRVAGFEALARWDNSSGVAVSPTEFIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQVVNAY
FSVNVSAIQLVRDDVAGVVRQALQKHGIGGERLMIELTESAIIGDPDLALSVLRELKALDARVAMDDFGTGYSNLAYLQR
LPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEVLGMKTTAEGVETTDQARLLSALGCDFGQGYLFARPMDGKAALDYW
RQSLTRPIF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=446, Percent_Identity=36.322869955157, Blast_Score=261, Evalue=8e-71,
Organism=Escherichia coli, GI87081921, Length=411, Percent_Identity=27.9805352798054, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI226510982, Length=497, Percent_Identity=31.1871227364185, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI87081743, Length=251, Percent_Identity=33.0677290836653, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=260, Percent_Identity=32.6923076923077, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=32.2175732217573, Blast_Score=131, Evalue=9e-32,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=33.6065573770492, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=33.852140077821, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI87081845, Length=276, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1788849, Length=440, Percent_Identity=26.1363636363636, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=33.1932773109244, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=446, Percent_Identity=25.7847533632287, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788381, Length=474, Percent_Identity=25.7383966244726, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=25.8474576271186, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=138, Percent_Identity=35.5072463768116, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=30.5194805194805, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=26.9662921348315, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=32.0754716981132, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 62570; Mature: 62439

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKGRTKPAVMPIDRTGEDRPLLFVGWIDALPVPAALVRPMARGNFRLHASNAAFDRLKL
CCCCCCCCCEEECCCCCCCCCEEEEEEHHHCCCCHHHHHHHHCCCEEEEECCCCHHHEEE
SPVGADAPIELLRAVERASQHPDEVQEFSCQLGEGPAARDLRGHIGPLPTETDDDGLFLL
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVEQRAHRDAPGADHAILLLDLARF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SRINEHIGPMAGDELIITVARRLKSSLRSGDILARTGGDEFAISTRIAGGRADVREMARR
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHH
IRGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVANQIRHAQIALKRAKQTDRIEIYEPE
HHHHCCCCEEECEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
AAMLSDNRFGLETELRNAIEEDRLHLAFQPLIEMASGRVAGFEALARWDNSSGVAVSPTE
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCC
FIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQVVNAYFSVNVSAIQLVRDDVAGVV
EEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
RQALQKHGIGGERLMIELTESAIIGDPDLALSVLRELKALDARVAMDDFGTGYSNLAYLQ
HHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEVLGMKTTAEGVETTDQARLLSALGC
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
DFGQGYLFARPMDGKAALDYWRQSLTRPIF
CCCCCEEEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKGRTKPAVMPIDRTGEDRPLLFVGWIDALPVPAALVRPMARGNFRLHASNAAFDRLKL
CCCCCCCCEEECCCCCCCCCEEEEEEHHHCCCCHHHHHHHHCCCEEEEECCCCHHHEEE
SPVGADAPIELLRAVERASQHPDEVQEFSCQLGEGPAARDLRGHIGPLPTETDDDGLFLL
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVEQRAHRDAPGADHAILLLDLARF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SRINEHIGPMAGDELIITVARRLKSSLRSGDILARTGGDEFAISTRIAGGRADVREMARR
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHH
IRGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVANQIRHAQIALKRAKQTDRIEIYEPE
HHHHCCCCEEECEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
AAMLSDNRFGLETELRNAIEEDRLHLAFQPLIEMASGRVAGFEALARWDNSSGVAVSPTE
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCC
FIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQVVNAYFSVNVSAIQLVRDDVAGVV
EEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
RQALQKHGIGGERLMIELTESAIIGDPDLALSVLRELKALDARVAMDDFGTGYSNLAYLQ
HHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEVLGMKTTAEGVETTDQARLLSALGC
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
DFGQGYLFARPMDGKAALDYWRQSLTRPIF
CCCCCEEEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]