Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487526
Identifier: 103487526
GI number: 103487526
Start: 2155601
End: 2156077
Strand: Reverse
Name: 103487526
Synonym: Sala_2045
Alternate gene names: NA
Gene position: 2156077-2155601 (Counterclockwise)
Preceding gene: 103487527
Following gene: 103487521
Centisome position: 64.45
GC content: 67.71
Gene sequence:
>477_bases ATGACCACCGATTTTTCACCGCGCCTGTTCGAGCGCGATTCCGACATCCGCGCACTGGGCGAGGGGCTGCTCGCCTGCGC GCTGCCGCGCGCGGCGTGGACGCACGAGGCGCATCTCGCCGCCTGCCTGTGGCTGCTCACCGAGCGCCCCGACATCGATA TCGACGCCGAAATCGCGGGGCTCATCCGCCGCTTCAACGAAAGCGTCGGCGGGGTGAACGACGACCACAATGGCTATCAC GACAGCATCACCCGCGCCTATGTCGCGGGGGTGCGGCGGTTCCTGTCCGAAACCGCCGAGACGGCGCTGATGGCGCGCGT CAATGCGCTGCTCCTGTCGGACGTCGGCCGCCGCGACTGGCCGCTGCGTTTCTACAGCCGCGAACGATTATTCTCGGTCG CGGCGCGGCGGGGGTTTGTCGAACCCGACCTCGCACCGCTTCCCCGCATCGTCATTGCTTCGCTGCGCTCGCAATGA
Upstream 100 bases:
>100_bases GTCGACGAGGGCGTCCGTCAGGCCGCTCCCCAGGTCGCCGTCGCGGCGTAACTTGCCCGGACAACTTCCGAGTGGCAGAT CACCCGGAAGGACCGGACCA
Downstream 100 bases:
>100_bases CGATGCGGGGAGGGGCTACCCTTTCGCCCCGGCTACATATTCCGCGACGTTCAGCGCGAGCACGTCGAGCGGGACGTTGC CGCCCTTCAGCACCACGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MTTDFSPRLFERDSDIRALGEGLLACALPRAAWTHEAHLAACLWLLTERPDIDIDAEIAGLIRRFNESVGGVNDDHNGYH DSITRAYVAGVRRFLSETAETALMARVNALLLSDVGRRDWPLRFYSRERLFSVAARRGFVEPDLAPLPRIVIASLRSQ
Sequences:
>Translated_158_residues MTTDFSPRLFERDSDIRALGEGLLACALPRAAWTHEAHLAACLWLLTERPDIDIDAEIAGLIRRFNESVGGVNDDHNGYH DSITRAYVAGVRRFLSETAETALMARVNALLLSDVGRRDWPLRFYSRERLFSVAARRGFVEPDLAPLPRIVIASLRSQ >Mature_157_residues TTDFSPRLFERDSDIRALGEGLLACALPRAAWTHEAHLAACLWLLTERPDIDIDAEIAGLIRRFNESVGGVNDDHNGYHD SITRAYVAGVRRFLSETAETALMARVNALLLSDVGRRDWPLRFYSRERLFSVAARRGFVEPDLAPLPRIVIASLRSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17748; Mature: 17617
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDFSPRLFERDSDIRALGEGLLACALPRAAWTHEAHLAACLWLLTERPDIDIDAEIAG CCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LIRRFNESVGGVNDDHNGYHDSITRAYVAGVRRFLSETAETALMARVNALLLSDVGRRDW HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLRFYSRERLFSVAARRGFVEPDLAPLPRIVIASLRSQ CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TTDFSPRLFERDSDIRALGEGLLACALPRAAWTHEAHLAACLWLLTERPDIDIDAEIAG CCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LIRRFNESVGGVNDDHNGYHDSITRAYVAGVRRFLSETAETALMARVNALLLSDVGRRDW HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLRFYSRERLFSVAARRGFVEPDLAPLPRIVIASLRSQ CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA