| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487309
Identifier: 103487309
GI number: 103487309
Start: 1921903
End: 1922271
Strand: Direct
Name: 103487309
Synonym: Sala_1825
Alternate gene names: NA
Gene position: 1921903-1922271 (Clockwise)
Preceding gene: 103487304
Following gene: 103487311
Centisome position: 57.45
GC content: 62.87
Gene sequence:
>369_bases ATGTCATCGCGCTCTAGACTTGTCGCTCATCGCGCCCTTTCTTATGGCGACCGCACGGCATTGACCAGCGGGAGAAAAAC CATGGTGCAGAAACTCGACGATGCGCAGCGCAGCGCGCTGCTCGCCCGCTTCCCCCAATGGACGCACGACCCGGTGCGCG ATGCGATCACGCGGCAGTTCCGGTTCGACGATTTCGCGCAGGCCTTCGGCTTCATGGCGAGCGTCGCGATCGTCGCCGAA AAGCTGGACCATCATCCCGAATGGTCGAACGTCTATAACCGCGTCGACGTGCTGCTGACGACGCACGATGCCAACGGACT TTCGGAGCGCGACGCGAAGCTCGCGGAGGCGATCGAGGCGCTGCTCTGA
Upstream 100 bases:
>100_bases CCGCCGGACAGCGGCGCGTCTCTGGTCCGGGCAACCAGCCCGTCCTGCGAGACGCTTCTTGCCGACGAACTTCAGGGGGC AATCACGGTGGGTCAATATC
Downstream 100 bases:
>100_bases GCCTCGATCAGAGGATTTCGCGCACCTTGTCCTGCGGTCGGCACAGCCGCACGCCCTTTTCGGTTTCGACGAAGGGGCGC TCGACATAGGCGGGATTCGC
Product: transcriptional coactivator/pterin dehydratase
Products: NA
Alternate protein names: PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD [H]
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MSSRSRLVAHRALSYGDRTALTSGRKTMVQKLDDAQRSALLARFPQWTHDPVRDAITRQFRFDDFAQAFGFMASVAIVAE KLDHHPEWSNVYNRVDVLLTTHDANGLSERDAKLAEAIEALL
Sequences:
>Translated_122_residues MSSRSRLVAHRALSYGDRTALTSGRKTMVQKLDDAQRSALLARFPQWTHDPVRDAITRQFRFDDFAQAFGFMASVAIVAE KLDHHPEWSNVYNRVDVLLTTHDANGLSERDAKLAEAIEALL >Mature_121_residues SSRSRLVAHRALSYGDRTALTSGRKTMVQKLDDAQRSALLARFPQWTHDPVRDAITRQFRFDDFAQAFGFMASVAIVAEK LDHHPEWSNVYNRVDVLLTTHDANGLSERDAKLAEAIEALL
Specific function: Unknown
COG id: COG2154
COG function: function code H; Pterin-4a-carbinolamine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pterin-4-alpha-carbinolamine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI4557831, Length=92, Percent_Identity=54.3478260869565, Blast_Score=99, Evalue=9e-22, Organism=Homo sapiens, GI134133240, Length=118, Percent_Identity=42.3728813559322, Blast_Score=97, Evalue=2e-21, Organism=Caenorhabditis elegans, GI115533705, Length=110, Percent_Identity=46.3636363636364, Blast_Score=101, Evalue=9e-23, Organism=Drosophila melanogaster, GI45549100, Length=97, Percent_Identity=47.4226804123711, Blast_Score=99, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001533 [H]
Pfam domain/function: PF01329 Pterin_4a [H]
EC number: =4.2.1.96 [H]
Molecular weight: Translated: 13784; Mature: 13652
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRSRLVAHRALSYGDRTALTSGRKTMVQKLDDAQRSALLARFPQWTHDPVRDAITRQF CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RFDDFAQAFGFMASVAIVAEKLDHHPEWSNVYNRVDVLLTTHDANGLSERDAKLAEAIEA CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHH LL HC >Mature Secondary Structure SSRSRLVAHRALSYGDRTALTSGRKTMVQKLDDAQRSALLARFPQWTHDPVRDAITRQF CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RFDDFAQAFGFMASVAIVAEKLDHHPEWSNVYNRVDVLLTTHDANGLSERDAKLAEAIEA CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHH LL HC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA