| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487311
Identifier: 103487311
GI number: 103487311
Start: 1922795
End: 1923532
Strand: Direct
Name: 103487311
Synonym: Sala_1827
Alternate gene names: NA
Gene position: 1922795-1923532 (Clockwise)
Preceding gene: 103487309
Following gene: 103487314
Centisome position: 57.48
GC content: 69.38
Gene sequence:
>738_bases GTGAATGAATTGATCGATCGCAGGGCATTGCTGGCCGGGCTCGCGGGTGCGGGCGCGGTGGCCGCCATTCCTGCGCGGGC GCAGCTTCCGAACTGGGTCCGGCAGCCGGTGACGCCGCCGCCGGTCGATTATCTGGCCGTAGCGAAGAAGCAGCTTGCGA TGCAGGCGCGCAACATCCCGCAGACCGACCGCGTCGGTGTCGTCGATTTCGGCCTGCCGTCGTCGCGCCCGCGCTTTGCG CTGGTCGACATGGTCGCGGGCACGGTCGACCTGTTCCCGGTAACGCACGGCCGCGGCTCGGACCCGCAGCACGACGGCTG GCTCAAGAGCTTCTCGAACCGCGTCGGCAGCCTCGCGACCTCACGCGGGGCGTATCGCACCAGCGATTATTATTGGGGCG CCAACGGGTCGTCGATGCGGCTTGCGGGGCTGGAACCCGACAACAGCAACGCCGACGTTCGCGCGATCGTCGTCCATGGC GCCTGGTACGCCGACCCGGCGCTGATCGCGACGCAGGGCAAGCTGGGGCGCAGCGAGGGCTGTTTCGTGTTCGGCGAAGA ATTGCTGCCGATGATCCTCTACAAGCTCGGCCCCGGACGCCTGCTCTTCGCCGACCGGCTGAGCGCGCCGCCACCGCTGC CCGCGCCGTTCGACCTGCCCGCCGACCCGCTGCCGGGGATGGAAAATCTGCGCCGCGCAAGCAGCGTGAACGGGCCGCTG CCGACGACGGCAGACTGA
Upstream 100 bases:
>100_bases GCATGAAGGGGAACCACCAGCTTGCCTTTCGACGCGGAAACACGATTTATGCAAAGTCGAGGGACCGCCAAAGGGCGGCC GATGCGGGGTTGCTGTCAAA
Downstream 100 bases:
>100_bases CGAACTGACGACGAGCCGCAATGGCGGTCGGTCGGCAGCAGCGGCGAAAGACCAGCACCGCATTGTCTCACTTCGGTCGA AACCAGTCCCGCGCTATTCC
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MNELIDRRALLAGLAGAGAVAAIPARAQLPNWVRQPVTPPPVDYLAVAKKQLAMQARNIPQTDRVGVVDFGLPSSRPRFA LVDMVAGTVDLFPVTHGRGSDPQHDGWLKSFSNRVGSLATSRGAYRTSDYYWGANGSSMRLAGLEPDNSNADVRAIVVHG AWYADPALIATQGKLGRSEGCFVFGEELLPMILYKLGPGRLLFADRLSAPPPLPAPFDLPADPLPGMENLRRASSVNGPL PTTAD
Sequences:
>Translated_245_residues MNELIDRRALLAGLAGAGAVAAIPARAQLPNWVRQPVTPPPVDYLAVAKKQLAMQARNIPQTDRVGVVDFGLPSSRPRFA LVDMVAGTVDLFPVTHGRGSDPQHDGWLKSFSNRVGSLATSRGAYRTSDYYWGANGSSMRLAGLEPDNSNADVRAIVVHG AWYADPALIATQGKLGRSEGCFVFGEELLPMILYKLGPGRLLFADRLSAPPPLPAPFDLPADPLPGMENLRRASSVNGPL PTTAD >Mature_245_residues MNELIDRRALLAGLAGAGAVAAIPARAQLPNWVRQPVTPPPVDYLAVAKKQLAMQARNIPQTDRVGVVDFGLPSSRPRFA LVDMVAGTVDLFPVTHGRGSDPQHDGWLKSFSNRVGSLATSRGAYRTSDYYWGANGSSMRLAGLEPDNSNADVRAIVVHG AWYADPALIATQGKLGRSEGCFVFGEELLPMILYKLGPGRLLFADRLSAPPPLPAPFDLPADPLPGMENLRRASSVNGPL PTTAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26161; Mature: 26161
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNELIDRRALLAGLAGAGAVAAIPARAQLPNWVRQPVTPPPVDYLAVAKKQLAMQARNIP CCHHHHHHHHHHHHCCCCCCEECCCHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC QTDRVGVVDFGLPSSRPRFALVDMVAGTVDLFPVTHGRGSDPQHDGWLKSFSNRVGSLAT CCCCEEEEEECCCCCCCCEEHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH SRGAYRTSDYYWGANGSSMRLAGLEPDNSNADVRAIVVHGAWYADPALIATQGKLGRSEG CCCCCCCCCEEECCCCCEEEEEECCCCCCCCCEEEEEEECCEECCCEEEEECCCCCCCCC CFVFGEELLPMILYKLGPGRLLFADRLSAPPPLPAPFDLPADPLPGMENLRRASSVNGPL CEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC PTTAD CCCCC >Mature Secondary Structure MNELIDRRALLAGLAGAGAVAAIPARAQLPNWVRQPVTPPPVDYLAVAKKQLAMQARNIP CCHHHHHHHHHHHHCCCCCCEECCCHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC QTDRVGVVDFGLPSSRPRFALVDMVAGTVDLFPVTHGRGSDPQHDGWLKSFSNRVGSLAT CCCCEEEEEECCCCCCCCEEHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH SRGAYRTSDYYWGANGSSMRLAGLEPDNSNADVRAIVVHGAWYADPALIATQGKLGRSEG CCCCCCCCCEEECCCCCEEEEEECCCCCCCCCEEEEEEECCEECCCEEEEECCCCCCCCC CFVFGEELLPMILYKLGPGRLLFADRLSAPPPLPAPFDLPADPLPGMENLRRASSVNGPL CEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC PTTAD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA