BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is fabG [H]

Identifier: 103487304

GI number: 103487304

Start: 1918915

End: 1919718

Strand: Direct

Name: fabG [H]

Synonym: Sala_1820

Alternate gene names: 103487304

Gene position: 1918915-1919718 (Clockwise)

Preceding gene: 103487300

Following gene: 103487309

Centisome position: 57.36

GC content: 69.03

Gene sequence:

>804_bases
ATGGCGCGGAAGGCGATTTTCATCACCGGCGGGGGTTCGGGCATCGGCCGCGCGGTCGCGCGCCATTTTGCCGGTCAGGG
CTGGTTCGTCGGCATCGCCGATGTCAACGCGCAGGGGATCGACGAAACCGCGGCGCTGCTTCCCGACGGCGCCGCGTCGC
GGCACGTCATGGACGTGCGCGACCGCGACCAGTGGAAAGCCGCGCTCGACGCATTCGCGCGCGCCAGCGGCGGCCGCCTC
GACGTGCTGTTCAACAACGCCGGCATCGGATCGGGGGGCCAGTTCATCGACATGGCGCCCGAAGAGGCGGACCGGCTGAT
CGCGATCAATTTCGGCGGCGTCGTCAACGGCATCTATATGGCGCTGCCTTTGCTGCGCGCGACGCCGGGATCGGCCATCC
TCAACACGGGATCGGCGTCGGGATTCTATGGCGTCGGCGGGCTCGCGGTCTATTCGGCGACCAAATTCGCGGTGCGCGGG
CTCACCGAAGCGCTCGAAATCGAGTTCGCCAAGCACGGCATCAAGGTTCGCTCGCTGATGCCCGGCTTCATCGACACGCC
CTTGCTCGATCAGGTCAGCGCCGACAGCAACGAACCCGCACGCAGCCGACTGGCAGCCAGCGGGTTCGAGATTTCGCCCG
TCGAGGATGTCGCGCGCGCGGCGTGGGACGCCGTCCACGGCGACCGGGTGCATGTGCCCGTCGGCAAGATGGCCCGCCGC
CTCGCCCGCCTCGCCCGCTGGTTCCCCGGCCTGATCGCGCGCCAGTCGAAGAAGGTCGACGGGCTGGGCGCCGCAGGGGA
TTGA

Upstream 100 bases:

>100_bases
GATACCGGCCGCACCGCCGCCCGCCAAGTCGCGATTGCCGCTTGACGATCACGTCAACTTCGCATCTTGTGCAATTGACA
TGAATGTAAGGAGGGAGCGG

Downstream 100 bases:

>100_bases
CAGGCGGTGGCTTGGGGTTGGGGGCTGTCACAGCCCTCTCCCCGTCAGGGCAGAGGGTTGGAAGAGGGGGCTGACGCGGT
TCAGGCCCTTCTCGACTGCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MARKAIFITGGGSGIGRAVARHFAGQGWFVGIADVNAQGIDETAALLPDGAASRHVMDVRDRDQWKAALDAFARASGGRL
DVLFNNAGIGSGGQFIDMAPEEADRLIAINFGGVVNGIYMALPLLRATPGSAILNTGSASGFYGVGGLAVYSATKFAVRG
LTEALEIEFAKHGIKVRSLMPGFIDTPLLDQVSADSNEPARSRLAASGFEISPVEDVARAAWDAVHGDRVHVPVGKMARR
LARLARWFPGLIARQSKKVDGLGAAGD

Sequences:

>Translated_267_residues
MARKAIFITGGGSGIGRAVARHFAGQGWFVGIADVNAQGIDETAALLPDGAASRHVMDVRDRDQWKAALDAFARASGGRL
DVLFNNAGIGSGGQFIDMAPEEADRLIAINFGGVVNGIYMALPLLRATPGSAILNTGSASGFYGVGGLAVYSATKFAVRG
LTEALEIEFAKHGIKVRSLMPGFIDTPLLDQVSADSNEPARSRLAASGFEISPVEDVARAAWDAVHGDRVHVPVGKMARR
LARLARWFPGLIARQSKKVDGLGAAGD
>Mature_266_residues
ARKAIFITGGGSGIGRAVARHFAGQGWFVGIADVNAQGIDETAALLPDGAASRHVMDVRDRDQWKAALDAFARASGGRLD
VLFNNAGIGSGGQFIDMAPEEADRLIAINFGGVVNGIYMALPLLRATPGSAILNTGSASGFYGVGGLAVYSATKFAVRGL
TEALEIEFAKHGIKVRSLMPGFIDTPLLDQVSADSNEPARSRLAASGFEISPVEDVARAAWDAVHGDRVHVPVGKMARRL
ARLARWFPGLIARQSKKVDGLGAAGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40807363, Length=255, Percent_Identity=25.4901960784314, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI4503817, Length=237, Percent_Identity=27.0042194092827, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI15277342, Length=198, Percent_Identity=32.3232323232323, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI210032110, Length=255, Percent_Identity=25.8823529411765, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=28.9855072463768, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI223718074, Length=206, Percent_Identity=31.0679611650485, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI66933014, Length=202, Percent_Identity=35.6435643564356, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI310128830, Length=269, Percent_Identity=26.3940520446097, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI310115468, Length=269, Percent_Identity=26.3940520446097, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI5031737, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI142976729, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4758504, Length=215, Percent_Identity=31.1627906976744, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI25282469, Length=213, Percent_Identity=26.7605633802817, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4504505, Length=195, Percent_Identity=31.2820512820513, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI4504503, Length=186, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI59889578, Length=184, Percent_Identity=32.0652173913043, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87082100, Length=198, Percent_Identity=35.8585858585859, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788459, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=31.6326530612245, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI2367365, Length=186, Percent_Identity=33.8709677419355, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=253, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367175, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=28.8537549407115, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=220, Percent_Identity=28.6363636363636, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787820, Length=218, Percent_Identity=26.1467889908257, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=233, Percent_Identity=27.4678111587983, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=194, Percent_Identity=31.9587628865979, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=30.5418719211823, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=217, Percent_Identity=29.9539170506912, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=31.7204301075269, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193203115, Length=250, Percent_Identity=26.4, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=250, Percent_Identity=26.4, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=189, Percent_Identity=31.2169312169312, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=32.994923857868, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=209, Percent_Identity=27.7511961722488, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=27.807486631016, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=215, Percent_Identity=30.6976744186047, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=202, Percent_Identity=24.7524752475248, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=246, Percent_Identity=24.7967479674797, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=235, Percent_Identity=27.6595744680851, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=27.6995305164319, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=31.1557788944724, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=27.319587628866, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=232, Percent_Identity=26.7241379310345, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=191, Percent_Identity=28.2722513089005, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=186, Percent_Identity=31.7204301075269, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=25.7731958762887, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=33.8624338624339, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=32.4607329842932, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=27.1551724137931, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17737361, Length=220, Percent_Identity=33.6363636363636, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=30.2083333333333, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=31.5508021390374, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=196, Percent_Identity=32.1428571428571, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=31.2820512820513, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=204, Percent_Identity=30.3921568627451, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24651139, Length=193, Percent_Identity=28.4974093264249, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640492, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=27.2189349112426, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24581726, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355319, Length=213, Percent_Identity=28.6384976525822, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=30.5825242718447, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221510726, Length=194, Percent_Identity=31.4432989690722, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=28.921568627451, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665243, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221331218, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24641388, Length=198, Percent_Identity=33.8383838383838, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 27953; Mature: 27822

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKAIFITGGGSGIGRAVARHFAGQGWFVGIADVNAQGIDETAALLPDGAASRHVMDVR
CCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCEECCC
DRDQWKAALDAFARASGGRLDVLFNNAGIGSGGQFIDMAPEEADRLIAINFGGVVNGIYM
CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHH
ALPLLRATPGSAILNTGSASGFYGVGGLAVYSATKFAVRGLTEALEIEFAKHGIKVRSLM
HHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHC
PGFIDTPLLDQVSADSNEPARSRLAASGFEISPVEDVARAAWDAVHGDRVHVPVGKMARR
CCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHH
LARLARWFPGLIARQSKKVDGLGAAGD
HHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ARKAIFITGGGSGIGRAVARHFAGQGWFVGIADVNAQGIDETAALLPDGAASRHVMDVR
CCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCEECCC
DRDQWKAALDAFARASGGRLDVLFNNAGIGSGGQFIDMAPEEADRLIAINFGGVVNGIYM
CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHH
ALPLLRATPGSAILNTGSASGFYGVGGLAVYSATKFAVRGLTEALEIEFAKHGIKVRSLM
HHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHC
PGFIDTPLLDQVSADSNEPARSRLAASGFEISPVEDVARAAWDAVHGDRVHVPVGKMARR
CCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHH
LARLARWFPGLIARQSKKVDGLGAAGD
HHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]