| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487109
Identifier: 103487109
GI number: 103487109
Start: 1702995
End: 1703732
Strand: Direct
Name: 103487109
Synonym: Sala_1624
Alternate gene names: NA
Gene position: 1702995-1703732 (Clockwise)
Preceding gene: 103487107
Following gene: 103487110
Centisome position: 50.91
GC content: 63.01
Gene sequence:
>738_bases ATGACAAAACAGGCAATCCTTCATCGCATGGTCATGCCGGGGCACATCTGCCCCTATGGCCTCAAAGCCAAATATCTGCT CGAGCGCCGCGGCTATAGAGTCGACGACCGCTGGCTGACGACGCGCGAGCAGACCGATGCGTTCAAGGCGCAGCATGGCG TCCAGACGACGCCGCAGACCTTCATCGACGGGGTGCGGATCGGCGGTTATGACGATCTGCGCCGCCATTTCGGGCTGAAG GTCGCCGACCCCGATGCGGCCAGCTATACGCCCGTGATCGCGCTGTTCGCGATGACCGCGCTGATGGCGCTGGCGGCGAG CTTTGCCGCCTATGGCGATGCCTTTACGCTTCGCGCCGCCGAATGGTTCATCTCTTTCAGCATGATGGTGCTCGCGCTGC TGAAATTGCAGGATGTGGGCAGGTTCGCGACGATGTTCCTCAATTACGACCTGCTCGCGCGCCGCTGGGTTCCCTATGCG AGCATCTATCCCTTTGCCGAGGGGCTGGCGGGCGTGTTGATGACCGCGCACGCGCTGCCCTGGCTGTCGATCCCGCTGGC GCTGTTTATCGGCGGCATCGGCGCGGTGTCGGTGTTCAAGGCGGTCTATATCGACCGGCGCGACATCAAATGCGCGTGCG TCGGCGGCAGCAGCAAGGTGCCGCTGGGCTTCGTGTCGCTGACCGAAAATCTGATGATGGTCGCGATGGCGCTGTGGATG GCGCGCATGTGGGTGTGA
Upstream 100 bases:
>100_bases CGTATCGTCTCTACCCCGACATCGCCCGCGGCGGCCAGTTTGCCGATCGTCATCTGCATCGCTTGACTCCGTACCATGGT ACGGATGCTATAGGAGGGGC
Downstream 100 bases:
>100_bases GGACGTCGCCGAACTGTCATTGATGAAACGCAGAGCTGGGCTATCGAGGGGCATCGATTCGCCCCGACGGAGCCCAGCCC ATGTACAACCGCCGCCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane Associated Glutaredoxin; DoxX Subfamily; Glutaredoxin Like Protein; Glutaredoxine Domain-Containing Protein
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTKQAILHRMVMPGHICPYGLKAKYLLERRGYRVDDRWLTTREQTDAFKAQHGVQTTPQTFIDGVRIGGYDDLRRHFGLK VADPDAASYTPVIALFAMTALMALAASFAAYGDAFTLRAAEWFISFSMMVLALLKLQDVGRFATMFLNYDLLARRWVPYA SIYPFAEGLAGVLMTAHALPWLSIPLALFIGGIGAVSVFKAVYIDRRDIKCACVGGSSKVPLGFVSLTENLMMVAMALWM ARMWV
Sequences:
>Translated_245_residues MTKQAILHRMVMPGHICPYGLKAKYLLERRGYRVDDRWLTTREQTDAFKAQHGVQTTPQTFIDGVRIGGYDDLRRHFGLK VADPDAASYTPVIALFAMTALMALAASFAAYGDAFTLRAAEWFISFSMMVLALLKLQDVGRFATMFLNYDLLARRWVPYA SIYPFAEGLAGVLMTAHALPWLSIPLALFIGGIGAVSVFKAVYIDRRDIKCACVGGSSKVPLGFVSLTENLMMVAMALWM ARMWV >Mature_244_residues TKQAILHRMVMPGHICPYGLKAKYLLERRGYRVDDRWLTTREQTDAFKAQHGVQTTPQTFIDGVRIGGYDDLRRHFGLKV ADPDAASYTPVIALFAMTALMALAASFAAYGDAFTLRAAEWFISFSMMVLALLKLQDVGRFATMFLNYDLLARRWVPYAS IYPFAEGLAGVLMTAHALPWLSIPLALFIGGIGAVSVFKAVYIDRRDIKCACVGGSSKVPLGFVSLTENLMMVAMALWMA RMWV
Specific function: Unknown
COG id: COG0695
COG function: function code O; Glutaredoxin and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27291; Mature: 27159
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKQAILHRMVMPGHICPYGLKAKYLLERRGYRVDDRWLTTREQTDAFKAQHGVQTTPQT CCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHH FIDGVRIGGYDDLRRHFGLKVADPDAASYTPVIALFAMTALMALAASFAAYGDAFTLRAA HHCCCCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH EWFISFSMMVLALLKLQDVGRFATMFLNYDLLARRWVPYASIYPFAEGLAGVLMTAHALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC WLSIPLALFIGGIGAVSVFKAVYIDRRDIKCACVGGSSKVPLGFVSLTENLMMVAMALWM HHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ARMWV HHHCC >Mature Secondary Structure TKQAILHRMVMPGHICPYGLKAKYLLERRGYRVDDRWLTTREQTDAFKAQHGVQTTPQT CHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHH FIDGVRIGGYDDLRRHFGLKVADPDAASYTPVIALFAMTALMALAASFAAYGDAFTLRAA HHCCCCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH EWFISFSMMVLALLKLQDVGRFATMFLNYDLLARRWVPYASIYPFAEGLAGVLMTAHALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC WLSIPLALFIGGIGAVSVFKAVYIDRRDIKCACVGGSSKVPLGFVSLTENLMMVAMALWM HHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ARMWV HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA