| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is engD [H]
Identifier: 103487106
GI number: 103487106
Start: 1701043
End: 1702140
Strand: Direct
Name: engD [H]
Synonym: Sala_1621
Alternate gene names: 103487106
Gene position: 1701043-1702140 (Clockwise)
Preceding gene: 103487104
Following gene: 103487107
Centisome position: 50.85
GC content: 64.48
Gene sequence:
>1098_bases ATGGGTTTCAAATGCGGGATCGTCGGGCTGCCCAATGTCGGCAAGTCCACCCTGTTCAACGCGCTGACCGAAACCGCGGC GGCGCAGGCGGCGAACTATCCCTTCTGCACGATCGAGCCGAATATCGGCAATGTCGCGGTGCCCGACGACCGGCTCGACA AGCTGGCGGCAATCGCGAACAGCAAGAAGATCATCGCGACACAGCTCGCCTTCGTCGATATTGCGGGCCTCGTGCGCGGC GCGTCGAAGGGCGAGGGGCTGGGCAACCAGTTCCTCGGCAATATCCGCGAGGTCGACGCGATCGTCCATGTGCTGCGCTG TTTCGAGAATGACGACATCCAGCATGTCGAAAACAAGGTCGACCCCGTCGCCGATGCCGAGACGGTCGAGACCGAACTGC TGCTCGCCGACCTCGAAAGTCTGGAAAAGCGCCTGCCCGCCTTTGTCAAAAAAGCGGCACAGGGGGACAAGGAAGCGAAG ATCGCCACATCGGTGCTGGGTCAGGCCCTCGACCTGCTGCGCGAAGGCAAGCCCGCGCGGCTGGTCGAACCCGGCGACGA CGAGGAAGCCCGTGTGCTGCGCACCGCGCAGCTTTTGACCTCCAAACCCGTGCTTTATGTCTGCAACGTCGACGAGGGCA GCGCGGCGAACGGCAACGCCTTTTCGGAAAAGGTGTTCGCCAAGGCTGCGGCCGAGGGCGCGCAGGCAGTGGTCGTTTCG GCGGCGATCGAGAGCGAACTGGTGACGATGGACATGGCCGACCGGCTGGAGTTCCTGGCCGAAATGGGCCTGAAGGAAAC CGGCCTCGCGCGCGTCATCCGCGCCGGGTATGAGCTGCTCCACCTCATCACCTTCTTCACCGTCGGCCCGCGGGAAGCGC GCGCATGGACCGTGCATCAGGGCGCGACCGCGCCCGAAGCCGCGGGCGAGATCCACAGCGATTTCCAGAAGGGCTTCATC CGCGCCGAAACGATCGCCTATGACGATTATGTCGCGCTGGGCGGCGAAGCCCGCGCGCGCGAAGCGGGCAAGCTGCGCGC CGAGGGCAAGGCCTATGTCGTGCACGACGGCGACGTGATGCATTTCCTGCATAGTTGA
Upstream 100 bases:
>100_bases GCCAAGTCTGAACGCTGCGCAACCGCAAAGACTGGCGCGCCGCGCGACTTGGCGCTAGGGGCGCTGCGACGCCGGGGTCC TCCGGCCGGATGGAGTTTTT
Downstream 100 bases:
>100_bases TCGCGAGGCTGACCAAACTTCGTCATTGCGAGGAGCGTAGCGACGAAGCAATCTCCAGCGATGCACCCTGACGCTCAGCC CGCAGTTTACATCATGACCA
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRG ASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAK IATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFI RAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS
Sequences:
>Translated_365_residues MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRG ASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAK IATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFI RAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS >Mature_364_residues GFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIANSKKIIATQLAFVDIAGLVRGA SKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKVDPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKI ATSVLGQALDLLREGKPARLVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVSA AIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQGATAPEAAGEIHSDFQKGFIR AETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVMHFLHS
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=365, Percent_Identity=42.1917808219178, Blast_Score=286, Evalue=2e-77, Organism=Homo sapiens, GI58761502, Length=212, Percent_Identity=36.3207547169811, Blast_Score=148, Evalue=7e-36, Organism=Escherichia coli, GI1787454, Length=365, Percent_Identity=55.8904109589041, Blast_Score=402, Evalue=1e-113, Organism=Escherichia coli, GI1789574, Length=128, Percent_Identity=33.59375, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=42.4657534246575, Blast_Score=280, Evalue=6e-76, Organism=Saccharomyces cerevisiae, GI6319499, Length=373, Percent_Identity=38.0697050938338, Blast_Score=239, Evalue=5e-64, Organism=Saccharomyces cerevisiae, GI6321773, Length=377, Percent_Identity=37.4005305039788, Blast_Score=232, Evalue=6e-62, Organism=Saccharomyces cerevisiae, GI6321649, Length=336, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=8e-19, Organism=Drosophila melanogaster, GI24640873, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76, Organism=Drosophila melanogaster, GI24640877, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76, Organism=Drosophila melanogaster, GI24640875, Length=365, Percent_Identity=42.4657534246575, Blast_Score=281, Evalue=5e-76, Organism=Drosophila melanogaster, GI24640879, Length=322, Percent_Identity=40.0621118012422, Blast_Score=226, Evalue=2e-59,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39054; Mature: 38923
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIAN CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHHHHHHHHHHC SKKIIATQLAFVDIAGLVRGASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKV CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC DPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKIATSVLGQALDLLREGKPAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC LVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQ HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC GATAPEAAGEIHSDFQKGFIRAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVM CCCCCHHHHHHHHHHHHCCEEHEEEEECCCEEECCCHHHHHHCCCCCCCCEEEEECCCHH HFLHS HHHCC >Mature Secondary Structure GFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNIGNVAVPDDRLDKLAAIAN CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHHHHHHHHHHC SKKIIATQLAFVDIAGLVRGASKGEGLGNQFLGNIREVDAIVHVLRCFENDDIQHVENKV CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC DPVADAETVETELLLADLESLEKRLPAFVKKAAQGDKEAKIATSVLGQALDLLREGKPAR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC LVEPGDDEEARVLRTAQLLTSKPVLYVCNVDEGSAANGNAFSEKVFAKAAAEGAQAVVVS CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEH AAIESELVTMDMADRLEFLAEMGLKETGLARVIRAGYELLHLITFFTVGPREARAWTVHQ HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC GATAPEAAGEIHSDFQKGFIRAETIAYDDYVALGGEARAREAGKLRAEGKAYVVHDGDVM CCCCCHHHHHHHHHHHHCCEEHEEEEECCCEEECCCHHHHHHCCCCCCCCEEEEECCCHH HFLHS HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA