BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

Click here to switch to the map view.

The map label for this gene is yusZ [H]

Identifier: 103487104

GI number: 103487104

Start: 1699270

End: 1700259

Strand: Direct

Name: yusZ [H]

Synonym: Sala_1619

Alternate gene names: 103487104

Gene position: 1699270-1700259 (Clockwise)

Preceding gene: 103487103

Following gene: 103487106

Centisome position: 50.8

GC content: 68.69

Gene sequence:

>990_bases
ATGCCGCATACCCCCAATCGCCGCGAAATCCTGGCCGGGGCCGCCGCGCTGTCCGCCGCCCCTGCCCTGCTCCACGCCGC
GACGCCCGCGGGCGACCCGTCGCTGAAAGGCCGCACCATACTGATCACCGGCTGTTCGAGCGGGTTTGGGCGCATCGGCG
CGCTCCACTATGCCCGGCTCGGCGCGAAGGTCATCGCGACGATGCGCGGGCTGCCGCGCCCCGAAGCCGAAAGCCTGGCG
GCCGAAGCCGCGAAGGATAAGCTCGACCTCGATATCGTCGAGATCGACGTGACGAGCGATGCGTCGGTTGCGAGCGGGAC
TGCAAAGGCGCTCGCCATCGCGGGCGGGCGCATCGACACGCTGGTCAACAATGCCGGGATCGGCATCACCGGGCCGGTCG
AGGTGCAGGATATGGAAGCGACGCAGCTCATCTTCGACACCAATGTTTTTGGCATCCAGCGCATGCTGCGCGCGCTGTTG
CCACAGATGCGCGCGGCGAAGGGCGGGCAGGTCTTCAACATTTCGTCGCAGCTCGGGCGCGTCATCGTGCCGGGTGGCGG
CCATTATTCGGCGACCAAGTTCGCGGTCGAGGCGCTGTCCGAGCAGATGGCCTATGAACTGGTGCCGCATGGCATCGACG
TGACGGTGATCCAGCCGGGGGGCTATCCGACGAAGGTGTGGGTCAATCGCAACGCCTATACCGGGGCATTAAAGGCGCGA
AGCGATGCGGCGCTGCTCGACGCCTATGCGCCCTTCACGCGCGGCATGGGGACCGAGGACGGCAGCGGGCGCAGCGCCGA
TCCCGCCGACGTGCCGCGCGCGATTGCCGAGATCATGGCGATGCCCGCGGGCAAACGGCCGCTGCGCCGCGCGGTGCATC
CGGGGACCAGGCCGCAGGAAGCGATCAACCGCGTGTCGGCCGAGGTGCAGCTCGCGTGGCTGGGCGGGTCGCCGACGCTG
GGACCACTGGTCAAGGCGGTCCACGACTGA

Upstream 100 bases:

>100_bases
GCCAAAGGCGGACGTCGCGATCCCAAAGCCGCAGTCCAACCACCGATTTGGCACGCGCCGCCAACTAAGGCATGATGGCG
TCCGAAAGGAGCCGTTCGCC

Downstream 100 bases:

>100_bases
GGCGCGGGCGGGCCTATGGCGTCCGTTTGGGCGGCGGCGGCGGCGATCCGTCAGCGGTCTGCGACATCAAGGCGACACAC
ATGGTCCGGTGGACCGGATG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLA
AEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALL
PQMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR
SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTL
GPLVKAVHD

Sequences:

>Translated_329_residues
MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLA
AEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALL
PQMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR
SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTL
GPLVKAVHD
>Mature_328_residues
PHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLAA
EAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLP
QMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKARS
DAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTLG
PLVKAVHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=286, Percent_Identity=33.5664335664336, Blast_Score=135, Evalue=7e-32,
Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=37.3056994818653, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI44680136, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI44680133, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI17738292, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI150247226, Length=194, Percent_Identity=36.5979381443299, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI22507405, Length=195, Percent_Identity=32.3076923076923, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI19743808, Length=215, Percent_Identity=33.0232558139535, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI40548397, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010158, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010156, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI22758144, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI119392083, Length=191, Percent_Identity=31.9371727748691, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=34.9206349206349, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=27.1276595744681, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI40807363, Length=226, Percent_Identity=30.0884955752212, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=29.0155440414508, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4504503, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7705925, Length=194, Percent_Identity=32.4742268041237, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=32.3809523809524, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082100, Length=187, Percent_Identity=36.3636363636364, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=34.2391304347826, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787335, Length=195, Percent_Identity=31.7948717948718, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790717, Length=224, Percent_Identity=33.0357142857143, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=31.3513513513514, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=34.1968911917098, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17507613, Length=223, Percent_Identity=35.4260089686099, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563809, Length=223, Percent_Identity=35.4260089686099, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=239, Percent_Identity=30.1255230125523, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17557780, Length=203, Percent_Identity=31.5270935960591, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=240, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193210355, Length=194, Percent_Identity=32.4742268041237, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=190, Percent_Identity=33.6842105263158, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=30.4568527918782, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=211, Percent_Identity=28.436018957346, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=214, Percent_Identity=29.9065420560748, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=218, Percent_Identity=29.3577981651376, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=219, Percent_Identity=29.6803652968037, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=32.994923857868, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=29.2307692307692, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=31.5270935960591, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=33.1632653061224, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=32.258064516129, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=31.0204081632653, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=30.0813008130081, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21358495, Length=210, Percent_Identity=30, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=34.3434343434343, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=213, Percent_Identity=33.8028169014084, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356301, Length=200, Percent_Identity=29.5, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=32.2916666666667, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24651139, Length=190, Percent_Identity=29.4736842105263, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24584752, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24640442, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580925, Length=213, Percent_Identity=29.1079812206573, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24581726, Length=181, Percent_Identity=30.3867403314917, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34242; Mature: 34111

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARL
CCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GAKVIATMRGLPRPEAESLAAEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDT
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHEEEEECCCHHH
LVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLPQMRAAKGGQVFNISSQLGR
HHCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCE
VIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEECEEECC
SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQE
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHH
AINRVSAEVQLAWLGGSPTLGPLVKAVHD
HHHHHCCEEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure 
PHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARL
CCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GAKVIATMRGLPRPEAESLAAEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDT
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHEEEEECCCHHH
LVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLPQMRAAKGGQVFNISSQLGR
HHCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCE
VIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEECEEECC
SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQE
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHH
AINRVSAEVQLAWLGGSPTLGPLVKAVHD
HHHHHCCEEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]