Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486075
Identifier: 103486075
GI number: 103486075
Start: 591820
End: 592956
Strand: Direct
Name: 103486075
Synonym: Sala_0582
Alternate gene names: NA
Gene position: 591820-592956 (Clockwise)
Preceding gene: 103486056
Following gene: 103486077
Centisome position: 17.69
GC content: 64.29
Gene sequence:
>1137_bases ATGAACGGGGACATCGAAGGGATCGGGGCGGCGGTGACCGCGGGGCTGGCGGCGCGCGCGGTCGAATCGGCGCATGGCGG CGCCGAGCGCGCCAATGCGCCGCTGCGCTGTCTCAATTGCGGGACCAGCCTCGCCGGGTCGCATTGCCATCGTTGCGGGC AGCGGGCCGAGGTGCATCGCAGCTTCGGCGCGATCGGGCACGATCTGGTCCATGCCATCTTCCATTTCGAAGGCAAGATC TGGAACACGCTGCCGCTGCTTGCATGGCGGCCGGGCGACCTGACCCGCCGCTATATCCACGGCGAGCGTGCGCGCTTCAT CTCGCCGCTGGCGCTGTTCCTCTTCGCGGTGTTCCTGACCTATGCCGTGCTCGCGATGATCGGTAGCGGTGGCGAATTCG GCGCCGCGCTGAGCAAGGCGGCCGACGAGCAGACGCGCACCACCGCGGTCAAGGACAGCATCCAGATGGAGGTCGACCGC ATCGACGGCGAGCTTGCGAAAGCGGGGCTGGCGGACGACCGGCGCCGCGCGCTCGAAGCCGAGCGCAATATCCTCCAGCA AAGCGCCACCTATCTGGGCGTTGCGCGCGCGCGCAGCCAGAGCGAGCGAAGGGCCGATCGCGCCGCAGGACCGCCGGTGC TCGACGATCCGCGCGACCAGGTGGCGACGAGCGCCGATTTCATCTCGCGCAACAAGATCGATACCGGGGTGCCCTTCATC GACAATGGCCTCAAAAAGGCGTTCGCAAACCCGGCGCTGGTTCTCTACAAACTTCAGGCGAACGCCTATAAGTTCGCCTG GGCGCTGATCCCGCTGTCGCTGCCCTTCCTGTGGCTGCTCTACCCCTTCAGTCGGCGCTTCCACGCTTACGACCATTTCG TTTTCGTCACCTATTCGATTTCGTTCATGCTGCTGCTCTTCGTTGTCGTGCGGCTTTTGAACGTGACGATTTTCGGCGAG GTAGCGACCTTTCTTGCGATGCTCTATGTGCCCTTCCACATGTATCGTCAGCTGCGCGGCGCCTATCGCTCGTCGCGCTT CGGTGCCTTTGTGCGCGCCAACCTGCTGCTCTTTTTCAGCCTGTTCACGCTTATCTGGTTCATGCTGTTGCTGCTCGCGC TCGGCATCAGCGGCTAA
Upstream 100 bases:
>100_bases GGTGAGCGTTTCGGTGATCATCGAACCGCCTCTATCATGTTTCGCCGACCTGCCGAAAGCCCCGTTGCGTGGTACCCTTC GGGCCACTAGTCAGGGGCGC
Downstream 100 bases:
>100_bases CAAGGCCCGTAACGATCGGCGGACACAGACGCGGCAGGGGCGATTCCCGGCAAGGAGGAGGATGGCGACGCACGCGGCCT GGAGAGCGATCGACCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MNGDIEGIGAAVTAGLAARAVESAHGGAERANAPLRCLNCGTSLAGSHCHRCGQRAEVHRSFGAIGHDLVHAIFHFEGKI WNTLPLLAWRPGDLTRRYIHGERARFISPLALFLFAVFLTYAVLAMIGSGGEFGAALSKAADEQTRTTAVKDSIQMEVDR IDGELAKAGLADDRRRALEAERNILQQSATYLGVARARSQSERRADRAAGPPVLDDPRDQVATSADFISRNKIDTGVPFI DNGLKKAFANPALVLYKLQANAYKFAWALIPLSLPFLWLLYPFSRRFHAYDHFVFVTYSISFMLLLFVVVRLLNVTIFGE VATFLAMLYVPFHMYRQLRGAYRSSRFGAFVRANLLLFFSLFTLIWFMLLLLALGISG
Sequences:
>Translated_378_residues MNGDIEGIGAAVTAGLAARAVESAHGGAERANAPLRCLNCGTSLAGSHCHRCGQRAEVHRSFGAIGHDLVHAIFHFEGKI WNTLPLLAWRPGDLTRRYIHGERARFISPLALFLFAVFLTYAVLAMIGSGGEFGAALSKAADEQTRTTAVKDSIQMEVDR IDGELAKAGLADDRRRALEAERNILQQSATYLGVARARSQSERRADRAAGPPVLDDPRDQVATSADFISRNKIDTGVPFI DNGLKKAFANPALVLYKLQANAYKFAWALIPLSLPFLWLLYPFSRRFHAYDHFVFVTYSISFMLLLFVVVRLLNVTIFGE VATFLAMLYVPFHMYRQLRGAYRSSRFGAFVRANLLLFFSLFTLIWFMLLLLALGISG >Mature_378_residues MNGDIEGIGAAVTAGLAARAVESAHGGAERANAPLRCLNCGTSLAGSHCHRCGQRAEVHRSFGAIGHDLVHAIFHFEGKI WNTLPLLAWRPGDLTRRYIHGERARFISPLALFLFAVFLTYAVLAMIGSGGEFGAALSKAADEQTRTTAVKDSIQMEVDR IDGELAKAGLADDRRRALEAERNILQQSATYLGVARARSQSERRADRAAGPPVLDDPRDQVATSADFISRNKIDTGVPFI DNGLKKAFANPALVLYKLQANAYKFAWALIPLSLPFLWLLYPFSRRFHAYDHFVFVTYSISFMLLLFVVVRLLNVTIFGE VATFLAMLYVPFHMYRQLRGAYRSSRFGAFVRANLLLFFSLFTLIWFMLLLLALGISG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41863; Mature: 41863
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGDIEGIGAAVTAGLAARAVESAHGGAERANAPLRCLNCGTSLAGSHCHRCGQRAEVHR CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECCCCHHCHHHHHHHHHHHHHHH SFGAIGHDLVHAIFHFEGKIWNTLPLLAWRPGDLTRRYIHGERARFISPLALFLFAVFLT HHHHHHHHHHHHHHHHCCCHHCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH YAVLAMIGSGGEFGAALSKAADEQTRTTAVKDSIQMEVDRIDGELAKAGLADDRRRALEA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ERNILQQSATYLGVARARSQSERRADRAAGPPVLDDPRDQVATSADFISRNKIDTGVPFI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHH DNGLKKAFANPALVLYKLQANAYKFAWALIPLSLPFLWLLYPFSRRFHAYDHFVFVTYSI HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFMLLLFVVVRLLNVTIFGEVATFLAMLYVPFHMYRQLRGAYRSSRFGAFVRANLLLFFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTLIWFMLLLLALGISG HHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNGDIEGIGAAVTAGLAARAVESAHGGAERANAPLRCLNCGTSLAGSHCHRCGQRAEVHR CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECCCCHHCHHHHHHHHHHHHHHH SFGAIGHDLVHAIFHFEGKIWNTLPLLAWRPGDLTRRYIHGERARFISPLALFLFAVFLT HHHHHHHHHHHHHHHHCCCHHCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH YAVLAMIGSGGEFGAALSKAADEQTRTTAVKDSIQMEVDRIDGELAKAGLADDRRRALEA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ERNILQQSATYLGVARARSQSERRADRAAGPPVLDDPRDQVATSADFISRNKIDTGVPFI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHH DNGLKKAFANPALVLYKLQANAYKFAWALIPLSLPFLWLLYPFSRRFHAYDHFVFVTYSI HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFMLLLFVVVRLLNVTIFGEVATFLAMLYVPFHMYRQLRGAYRSSRFGAFVRANLLLFFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTLIWFMLLLLALGISG HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA