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The map label for this gene is ltrA [H]

Identifier: 103486055

GI number: 103486055

Start: 575672

End: 576607

Strand: Direct

Name: ltrA [H]

Synonym: Sala_0562

Alternate gene names: 103486055

Gene position: 575672-576607 (Clockwise)

Preceding gene: 103486052

Following gene: 103486056

Centisome position: 17.21

GC content: 69.76

Gene sequence:

>936_bases
ATGGCGCTTCCCGATTATGAAGGCTGGGCCTGTTTCGTTGCGGTCGCCGACGGCGGCAGCTTCACCGCGGCGGCTGCCGC
GCTCGGTCTGTCGAAGGCGACCGTGTCGAAGGCGGTGACGCGGCTCGAGACGTCGCTTGGCATCACCTTGTTGCACCGAA
GTTCGCGCGTTGTCGCGGTGTCGACGGCGGGGGCGGGGCTGCTCGACGAAGCGCGCGCGATGGTCGCCGCGGCGACCGCG
GCCACCGAGGCGGCGCGCGGCGACCGGCTCGACCTCGCCGGCCCGATCCGCCTTGCCGCGCCGATGAGCTTCGGGATCAA
GGTGCTTGGCCCGGTGCTCGCCGCCTTTCTCGACCGCCATCCCGCAGTCGAGATCGACCTGTTGCTCAGCGACGCGCGCA
ACGACCCGATCGCCGAGGGCATCGACCTCACGCTGCGCATCGCGCCGCTCGCCGATTCCAGCCTGCTGGCGCGCACGATC
GCGCCCGTCGCGGCGTCGCTGATCGCCAGCCCCGCCTATCTCGAAAAGCACGGCACACCCCGGCATCCGCTCGACCTCGC
GCGCCATCGCCTCATCGGCTACGGTCATCGCCAGCGCGCGATGCCGCTCCATTTCTCGCGCGAAGGCGAAGAAGCGACGG
TGCTGCCGACCGGGCCGCTGTTCGCGAACAATGGCGATGTGATGGTGCCGATGATCGTCGCGGGGAGCGGCATTGCGGTG
CTGCCCGATTTCATCGCGGCGGAGGAACTCGCCGCGGGCACCGTGGTTCCGATCCTCACCGACTGGTCGCTGCCGCAGTC
GTATCTGCACCTTCTCTCGCCGCCCTCGCGGCTGCGTCCGGCGCGGGTGCGCGCCTTTTCGGATCATCTCGTCGATACGC
TGAAAGGCTCGTGCCGTGGCGCCAACGAGCGCTATGCGGCGCTCCGAAAGGGGTGA

Upstream 100 bases:

>100_bases
GCAATCTCCAGCTATCGGTCTTGGGCAAGGACGAAAGCTGGAGATTGCCGCGTCGCCTGCGGCTCCTCGCAATGACGAAC
AGGTGGGTAGGAGATAGTTG

Downstream 100 bases:

>100_bases
AGGTCTGCGCCGCGACTGTTGCAAATAGGGCGCGACTCGTGGATTCCTGCGGGTTAAATCAAAATTAACCTTTTCCCTTC
ATTGCTTTCATGGTTAATGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAVSTAGAGLLDEARAMVAAATA
ATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRHPAVEIDLLLSDARNDPIAEGIDLTLRIAPLADSSLLARTI
APVAASLIASPAYLEKHGTPRHPLDLARHRLIGYGHRQRAMPLHFSREGEEATVLPTGPLFANNGDVMVPMIVAGSGIAV
LPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLVDTLKGSCRGANERYAALRKG

Sequences:

>Translated_311_residues
MALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAVSTAGAGLLDEARAMVAAATA
ATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRHPAVEIDLLLSDARNDPIAEGIDLTLRIAPLADSSLLARTI
APVAASLIASPAYLEKHGTPRHPLDLARHRLIGYGHRQRAMPLHFSREGEEATVLPTGPLFANNGDVMVPMIVAGSGIAV
LPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLVDTLKGSCRGANERYAALRKG
>Mature_310_residues
ALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAVSTAGAGLLDEARAMVAAATAA
TEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRHPAVEIDLLLSDARNDPIAEGIDLTLRIAPLADSSLLARTIA
PVAASLIASPAYLEKHGTPRHPLDLARHRLIGYGHRQRAMPLHFSREGEEATVLPTGPLFANNGDVMVPMIVAGSGIAVL
PDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLVDTLKGSCRGANERYAALRKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=29.7297297297297, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789639, Length=284, Percent_Identity=28.169014084507, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=26.4604810996564, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=258, Percent_Identity=30.6201550387597, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=28.6206896551724, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789440, Length=253, Percent_Identity=26.4822134387352, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=27.0833333333333, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=24.8299319727891, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=26.9387755102041, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32589; Mature: 32458

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAV
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEE
STAGAGLLDEARAMVAAATAATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRH
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHCCHHHHHHHHHHHHCCC
PAVEIDLLLSDARNDPIAEGIDLTLRIAPLADSSLLARTIAPVAASLIASPAYLEKHGTP
CCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC
RHPLDLARHRLIGYGHRQRAMPLHFSREGEEATVLPTGPLFANNGDVMVPMIVAGSGIAV
CCHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEECCCEEECCCCEEEEEEEECCCCEE
LPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLVDTLKGSCRG
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCC
ANERYAALRKG
CCHHHHHHCCC
>Mature Secondary Structure 
ALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAV
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEE
STAGAGLLDEARAMVAAATAATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRH
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHCCHHHHHHHHHHHHCCC
PAVEIDLLLSDARNDPIAEGIDLTLRIAPLADSSLLARTIAPVAASLIASPAYLEKHGTP
CCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC
RHPLDLARHRLIGYGHRQRAMPLHFSREGEEATVLPTGPLFANNGDVMVPMIVAGSGIAV
CCHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEECCCEEECCCCEEEEEEEECCCCEE
LPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLVDTLKGSCRG
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCC
ANERYAALRKG
CCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]