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The map label for this gene is yfiO [C]

Identifier: 103486038

GI number: 103486038

Start: 559479

End: 560273

Strand: Direct

Name: yfiO [C]

Synonym: Sala_0545

Alternate gene names: 103486038

Gene position: 559479-560273 (Clockwise)

Preceding gene: 103486037

Following gene: 103486039

Centisome position: 16.72

GC content: 64.03

Gene sequence:

>795_bases
ATGACTCGTTTTGCACCCTCGCGCGCCGCTGTGCGCCTGCTCGCCGCCGCATTCGTGATCACGCCCATGCTGGCGGCCTG
CGCCGGTGGCGGCGGGGTCAAGCAGGATACGCGCTATGTCGCGCGCGACGTCAACACGCTCTACCGCGCCGCGCAGGAAC
GGCTCGACCGCGGGCAATACGGCATTGCCGCCGCGCTGTTCGACGAGGTCGAGCGTCAGCATCCCTATTCGCCCTGGGCG
CGCCGCGCACAGCTGATGAGCTCGTTCAGCTATTATATGGACCGCGAATATACGCCGGCGATCGAGGCCGCGCAGCGCTT
CCTCGCGATCCATCCGGGCAACAAGGACGCACCCTATGCCTATTATCTGATCGCGCTCAGCTATTATGAGCAGATCAGCG
ACGTGACGCGCGACCAGCGGATCACGCAGCAGGCGCAGGCCGCGCTTGGCGAAATCGTGCGCCGCTATCCCGACAGCCGC
TATGCCGCCGACGCGCGGCTCAAACTCGACCTGGTACAGGACCATCTGGCGGGCAAGGAGATGGAGATCGGGCGCTTTTA
TCAGCGCAGCTCGAACTGGCTCGCCGCGTCGATCCGTTTCCGCGAGGTGGTCGACAAATATCAGACCACCAGCCACGCGC
CCGAGGCGCTGTACCGCCTGACCGAATCCTATCTCGCGCTCGGTATTCCGGAAGAAGCCAAAAAGTCCGCGGCGGTGCTC
GGCGCCAACTATCCCGGCAATGAATGGTATGAGCGTGCGTACAAACTGATGCAGAAGCACGCACCGAGCGCATAG

Upstream 100 bases:

>100_bases
TCAAGGCACAATAGCTTTCTCTTGCAAGGCAAGGCCGAAACCCGACCGGGCGTGCCATCATTTATTTTGCGTTCATCCGC
GCTGTGGCTATACCGCGCGC

Downstream 100 bases:

>100_bases
ATTCTGCCTTTGTTCTGCGGTAAGGACGGCGCGTGCTGACCGCATTGTCCATCGCCAACATCGTTCTGATCGAGCGGCTC
GACCTCGATTTCGAGGCCGG

Product: DNA uptake lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTRFAPSRAAVRLLAAAFVITPMLAACAGGGGVKQDTRYVARDVNTLYRAAQERLDRGQYGIAAALFDEVERQHPYSPWA
RRAQLMSSFSYYMDREYTPAIEAAQRFLAIHPGNKDAPYAYYLIALSYYEQISDVTRDQRITQQAQAALGEIVRRYPDSR
YAADARLKLDLVQDHLAGKEMEIGRFYQRSSNWLAASIRFREVVDKYQTTSHAPEALYRLTESYLALGIPEEAKKSAAVL
GANYPGNEWYERAYKLMQKHAPSA

Sequences:

>Translated_264_residues
MTRFAPSRAAVRLLAAAFVITPMLAACAGGGGVKQDTRYVARDVNTLYRAAQERLDRGQYGIAAALFDEVERQHPYSPWA
RRAQLMSSFSYYMDREYTPAIEAAQRFLAIHPGNKDAPYAYYLIALSYYEQISDVTRDQRITQQAQAALGEIVRRYPDSR
YAADARLKLDLVQDHLAGKEMEIGRFYQRSSNWLAASIRFREVVDKYQTTSHAPEALYRLTESYLALGIPEEAKKSAAVL
GANYPGNEWYERAYKLMQKHAPSA
>Mature_263_residues
TRFAPSRAAVRLLAAAFVITPMLAACAGGGGVKQDTRYVARDVNTLYRAAQERLDRGQYGIAAALFDEVERQHPYSPWAR
RAQLMSSFSYYMDREYTPAIEAAQRFLAIHPGNKDAPYAYYLIALSYYEQISDVTRDQRITQQAQAALGEIVRRYPDSRY
AADARLKLDLVQDHLAGKEMEIGRFYQRSSNWLAASIRFREVVDKYQTTSHAPEALYRLTESYLALGIPEEAKKSAAVLG
ANYPGNEWYERAYKLMQKHAPSA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=243, Percent_Identity=26.3374485596708, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29927; Mature: 29796

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFAPSRAAVRLLAAAFVITPMLAACAGGGGVKQDTRYVARDVNTLYRAAQERLDRGQY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
GIAAALFDEVERQHPYSPWARRAQLMSSFSYYMDREYTPAIEAAQRFLAIHPGNKDAPYA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCHH
YYLIALSYYEQISDVTRDQRITQQAQAALGEIVRRYPDSRYAADARLKLDLVQDHLAGKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
MEIGRFYQRSSNWLAASIRFREVVDKYQTTSHAPEALYRLTESYLALGIPEEAKKSAAVL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GANYPGNEWYERAYKLMQKHAPSA
CCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TRFAPSRAAVRLLAAAFVITPMLAACAGGGGVKQDTRYVARDVNTLYRAAQERLDRGQY
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
GIAAALFDEVERQHPYSPWARRAQLMSSFSYYMDREYTPAIEAAQRFLAIHPGNKDAPYA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCHH
YYLIALSYYEQISDVTRDQRITQQAQAALGEIVRRYPDSRYAADARLKLDLVQDHLAGKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
MEIGRFYQRSSNWLAASIRFREVVDKYQTTSHAPEALYRLTESYLALGIPEEAKKSAAVL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GANYPGNEWYERAYKLMQKHAPSA
CCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]