Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485952
Identifier: 103485952
GI number: 103485952
Start: 471043
End: 471864
Strand: Direct
Name: 103485952
Synonym: Sala_0459
Alternate gene names: NA
Gene position: 471043-471864 (Clockwise)
Preceding gene: 103485951
Following gene: 103485954
Centisome position: 14.08
GC content: 65.57
Gene sequence:
>822_bases GTGAAGCGTCTTGTCCTGACCATCGCCCTTGTGGCGGGCCTTCCCGCCGCGGCCAATGCCGCGACCTGCGAACAGAGTTT CGAGAAGAAGGGCAATCCGGTGACGGGGCTGCGCTTCATCGCGACGACCAATGTACCGGGGATGAGCGCCGCGAGCGCGG TCGGCCAATTGAACGGCATCGTCGCGGCGAAAGGTTATGACATATTGGCCGCCGAGCAGGAGAGCGGCACGATGCTGATC GAACAGCCGCAGACGGGCAAGTCGCGCTCCTTCCCGATCGAGATCGCCGCCGACGGCGCGGGCAATGTGCGGATGGAAGC AAGGCTGCGCGCGGCGATGGGCGTCCCCGAAGCCGCGGCGAAGGCGGAGATGTGCGGCATCCTGGCGCAGCTCAAGGGCG GCAAGGCGGGCGAGGCGCTCGCGGCGAAGGGCATGAAGGCGACCACTGCGCCCGGCGCGCCGATCCGCATGAGCGTGCTG CGCTTTTCGCAGGACATCACCGGCGAGGCGGACAAGAACAGCGCCGCGGTGCCGCTGCGTTACAAGAACAAATCCTTCAC GCTTTACGGCCCCGTCGCCTATGTCGGTCCGGTCGGCGACAGCTATCGCGTCGAATGGAAGCTGGTGTCTAACGTGCTGA CCGACATCGTTCCGGGCCGTTCGTCGGCGGGGATGAATGTGAATTGCGTACTGGCGAAGGGGCAGGGGCCTTATGCGCTG CAACTGAAGCCCGGCAAACATGCCGAGCTGACGGGGACGTTCGACCGGCTCGATTACGGCCTGTCGCTCGTGTGGCTGAA GGATTGCCGCCCGGTGAAGTGA
Upstream 100 bases:
>100_bases AAAAGCTGTTGCAACGATATGGTTTTGCGACAATTTCCGGCGACATGCCGGGAACTGGAGACCAGTCTTGCGGTGCCGGA TTCGTGACGAAGGAGGATTT
Downstream 100 bases:
>100_bases CGGGCGGGGTTAATCCCCGCCCGCGCGGTCGACCATATCCATGAAATCGCGCGCGGCGTCGCGTTCGCTTGCGTCCTTGA ACGCGACGTCGAGGTCGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MKRLVLTIALVAGLPAAANAATCEQSFEKKGNPVTGLRFIATTNVPGMSAASAVGQLNGIVAAKGYDILAAEQESGTMLI EQPQTGKSRSFPIEIAADGAGNVRMEARLRAAMGVPEAAAKAEMCGILAQLKGGKAGEALAAKGMKATTAPGAPIRMSVL RFSQDITGEADKNSAAVPLRYKNKSFTLYGPVAYVGPVGDSYRVEWKLVSNVLTDIVPGRSSAGMNVNCVLAKGQGPYAL QLKPGKHAELTGTFDRLDYGLSLVWLKDCRPVK
Sequences:
>Translated_273_residues MKRLVLTIALVAGLPAAANAATCEQSFEKKGNPVTGLRFIATTNVPGMSAASAVGQLNGIVAAKGYDILAAEQESGTMLI EQPQTGKSRSFPIEIAADGAGNVRMEARLRAAMGVPEAAAKAEMCGILAQLKGGKAGEALAAKGMKATTAPGAPIRMSVL RFSQDITGEADKNSAAVPLRYKNKSFTLYGPVAYVGPVGDSYRVEWKLVSNVLTDIVPGRSSAGMNVNCVLAKGQGPYAL QLKPGKHAELTGTFDRLDYGLSLVWLKDCRPVK >Mature_273_residues MKRLVLTIALVAGLPAAANAATCEQSFEKKGNPVTGLRFIATTNVPGMSAASAVGQLNGIVAAKGYDILAAEQESGTMLI EQPQTGKSRSFPIEIAADGAGNVRMEARLRAAMGVPEAAAKAEMCGILAQLKGGKAGEALAAKGMKATTAPGAPIRMSVL RFSQDITGEADKNSAAVPLRYKNKSFTLYGPVAYVGPVGDSYRVEWKLVSNVLTDIVPGRSSAGMNVNCVLAKGQGPYAL QLKPGKHAELTGTFDRLDYGLSLVWLKDCRPVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28523; Mature: 28523
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLVLTIALVAGLPAAANAATCEQSFEKKGNPVTGLRFIATTNVPGMSAASAVGQLNGI CCHHEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCE VAAKGYDILAAEQESGTMLIEQPQTGKSRSFPIEIAADGAGNVRMEARLRAAMGVPEAAA EEECCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHHHHCCCCHHHH KAEMCGILAQLKGGKAGEALAAKGMKATTAPGAPIRMSVLRFSQDITGEADKNSAAVPLR HHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEHEEHHHHCCCCCCCCCCCEEEEE YKNKSFTLYGPVAYVGPVGDSYRVEWKLVSNVLTDIVPGRSSAGMNVNCVLAKGQGPYAL ECCCEEEEEECEEEECCCCCCEEEEHEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEE QLKPGKHAELTGTFDRLDYGLSLVWLKDCRPVK EECCCCCCEEEECHHHHCCCEEEEEECCCCCCC >Mature Secondary Structure MKRLVLTIALVAGLPAAANAATCEQSFEKKGNPVTGLRFIATTNVPGMSAASAVGQLNGI CCHHEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCE VAAKGYDILAAEQESGTMLIEQPQTGKSRSFPIEIAADGAGNVRMEARLRAAMGVPEAAA EEECCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHHHHCCCCHHHH KAEMCGILAQLKGGKAGEALAAKGMKATTAPGAPIRMSVLRFSQDITGEADKNSAAVPLR HHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEHEEHHHHCCCCCCCCCCCEEEEE YKNKSFTLYGPVAYVGPVGDSYRVEWKLVSNVLTDIVPGRSSAGMNVNCVLAKGQGPYAL ECCCEEEEEECEEEECCCCCCEEEEHEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEE QLKPGKHAELTGTFDRLDYGLSLVWLKDCRPVK EECCCCCCEEEECHHHHCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA