Click here to switch to the map view.

The map label for this gene is xerC [C]

Identifier: 103485933

GI number: 103485933

Start: 449278

End: 450282

Strand: Direct

Name: xerC [C]

Synonym: Sala_0440

Alternate gene names: 103485933

Gene position: 449278-450282 (Clockwise)

Preceding gene: 103485932

Following gene: 103485936

Centisome position: 13.43

GC content: 62.09

Gene sequence:

>1005_bases
ATGACGGCGCTTGCTCTCCATCTCTCGGCATATCTGCGGGAACATCTGCCGCGCGAACGCGCCGTCAGCCCGCACACGGT
GAAGACCTATGCCAACTGCTTCGTCCTCCTCGTCCAGTTCGCTGCCGATCGGCTGAAGCGCCGACCGACCGATCTCGAGG
TTGAGGATCTCGGCACAGACATGATCATGGCCTTCCTCGATCATGTGGAGATCGGCCGCGGCAGCTGCGTGCGGACCCGC
AATGGCAGGCTCGCCGCGATCCGATCCTTCTTCCGATACATCGAGTACCGGATTCCAGCCTGCCTCGATCAGGCACTCCG
TGTCAGAGCAATCCCGACCAAGAAGACAGACAAGGCGCTGATCGATTACCTCGACCGGGCCGAGATCAAGGCTTTGCTCG
ATACACCCGATCCCCGGACACGCCTCGGCACCCGTGATCGCGCGATGCTGCATCTTACCTATGCTGGCGGACTGAGGGTG
TCGGAACTCGTAACGCTGCAACTGGGCGATTTCCCGGACCGCTCCCTGTCCACCATGCACATCATGGGCAAAGGGCGACG
TGAACGGGTCCTGCCGCTGTGGAAGGAGACCCAGATCGCATTGCGCGCATGGCTTGCGATCCGGCCTCAAGTTGAGGTCA
CCGAGATTTTCCTCAATGCCAACGGGCAGCCGATGACCCGCGACGGATTTGCGTTCCGATTGGCCGAGCACGTCAAGACG
GCAGCGACGAAGCAGCCGTCGATCCTTGGGAAGCGCGTCACACCCCACGTGCTTCGTCATTCTTGCGCGATGCACACGCT
CGCGGCGACGGGGGACATTCGCAAGGTCGCATTATGGCTCGGCCACGCCAGTATCCAGAGCACCGAGACCTACTTGCGCG
CCGATCCCGAAGAGAAGCTGCAGATTCTCGCAGCCCACGGTGCCCCTGCGATCAAGCCGGGGCGCTTCAAGCCGCCTTCC
GACGCCTTGATCACAATGCTCACCGACGTTCGAAGGCGGGCCTGA

Upstream 100 bases:

>100_bases
ACGCGTCGATCGCCAACACGTACTGGTATCTCGAAGCCACGCCAGTGCTGCTGCGCGACATTGCGGCTGCAAGCGAGCAA
CTTTTTCAAGGAGAAGCGGC

Downstream 100 bases:

>100_bases
CCCGTCTTCGAACACTCCCTCTAACCCGCATATTATCTGGAGTGAAATCATGGAAAACCGAAGGAAACCTGCGTCTCTCG
CCGCCACGCTCGACATAAAC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDHVEIGRGSCVRTR
NGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKALIDYLDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRV
SELVTLQLGDFPDRSLSTMHIMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKT
AATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAHGAPAIKPGRFKPPS
DALITMLTDVRRRA

Sequences:

>Translated_334_residues
MTALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDHVEIGRGSCVRTR
NGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKALIDYLDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRV
SELVTLQLGDFPDRSLSTMHIMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKT
AATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAHGAPAIKPGRFKPPS
DALITMLTDVRRRA
>Mature_333_residues
TALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDHVEIGRGSCVRTRN
GRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKALIDYLDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVS
ELVTLQLGDFPDRSLSTMHIMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKTA
ATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAHGAPAIKPGRFKPPSD
ALITMLTDVRRRA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=327, Percent_Identity=30.8868501529052, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789261, Length=296, Percent_Identity=31.0810810810811, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1790767, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37660; Mature: 37529

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTD
CCHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHH
MIMAFLDHVEIGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKAL
HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHEEECCCCCHHHHH
IDYLDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMH
HHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEEECCCCEEEHEEEEEECCCCCCCCCEEE
IMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKT
EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
AATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKL
HHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHH
QILAAHGAPAIKPGRFKPPSDALITMLTDVRRRA
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTD
CHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHH
MIMAFLDHVEIGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKAL
HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHEEECCCCCHHHHH
IDYLDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMH
HHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEEECCCCEEEHEEEEEECCCCCCCCCEEE
IMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKT
EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
AATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKL
HHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHH
QILAAHGAPAIKPGRFKPPSDALITMLTDVRRRA
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]