Click here to switch to the map view.

The map label for this gene is xerC [C]

Identifier: 103485932

GI number: 103485932

Start: 448367

End: 449281

Strand: Direct

Name: xerC [C]

Synonym: Sala_0439

Alternate gene names: 103485932

Gene position: 448367-449281 (Clockwise)

Preceding gene: 103485931

Following gene: 103485933

Centisome position: 13.4

GC content: 61.86

Gene sequence:

>915_bases
ATGCTGAGCACGCAGATTGCCAGATACGTCTCGCTGTATCGCAGCTTGGGGCGGAAGTTCTCGGAACAGGAACGACTGCT
GCGCCAATACGCCGCTTTCGCTGAACGCTTCGGTGACCGGCACACCCGAGTGCAGCGCATCTACGACTGGTGCCACACGG
CAAGCTCGCAAAACGTGGCTCGCCATAGGTACGACGCTGCTCGTAACTTCAGCCTTTTCGCTCATGCCGAGGACCCAGAC
AACGAAGTCCCGCCTGTCGGCGTTTTCGGCCGGGGGAAGCGGCCACGTCCCACTCCGACCATAATCGAAGCGGACCAGGT
GCGGGCGATCATGGCGGCGGCATTGAACGTTCCGCCCCATGGCACGATTAGCCCATACACGTACCATTACCTGTTCGGCC
TGCTCGCGGCGACAGGTCTCCGGATTTCCGAGGCTCTCGCGCTACAGTGCAACGATCTGGTCGAGGATGGGCTGGTCGTC
CGCAACGGCAAGTTCGGCAAGCAGCGACTGATCGCCTTGCAGCCATCGACGCGCCAAGCACTCGAAGCCTACATTGCGAT
CCGCGCGAAGCACCCGGCCAAGTGTAATGACCTGTTCGTCACTATCCGGGGGCGGGCGCCGCACAAGGTGCGCGCCCACG
TCGTGTTCGTCAGGTTGGCCCGGCTTCTCGGATATCGTGGAGCAACCGGTACGGCAGGCATGCGACTCCACGATCTGCGA
CATACGTTCGCTGTTCGCTCGCTTGAGTCCTGCCCGCGTGACAGGGAGGCCATTGCCCACCACATGGCCGGTCTCAGTGT
CTACCTGGGGCACGCGTCGATCGCCAACACGTACTGGTATCTCGAAGCCACGCCAGTGCTGCTGCGCGACATTGCGGCTG
CAAGCGAGCAACTTTTTCAAGGAGAAGCGGCATGA

Upstream 100 bases:

>100_bases
CGATCCTGCGCCACAGCTCGCCCGAGACCACCGCCATCTACGCCAAGGTCGACCTGCCGATGCTCATGAAAATCGCGCAG
CCATGGCCGGGAGAACCGTC

Downstream 100 bases:

>100_bases
CGGCGCTTGCTCTCCATCTCTCGGCATATCTGCGGGAACATCTGCCGCGCGAACGCGCCGTCAGCCCGCACACGGTGAAG
ACCTATGCCAACTGCTTCGT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLSTQIARYVSLYRSLGRKFSEQERLLRQYAAFAERFGDRHTRVQRIYDWCHTASSQNVARHRYDAARNFSLFAHAEDPD
NEVPPVGVFGRGKRPRPTPTIIEADQVRAIMAAALNVPPHGTISPYTYHYLFGLLAATGLRISEALALQCNDLVEDGLVV
RNGKFGKQRLIALQPSTRQALEAYIAIRAKHPAKCNDLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLR
HTFAVRSLESCPRDREAIAHHMAGLSVYLGHASIANTYWYLEATPVLLRDIAAASEQLFQGEAA

Sequences:

>Translated_304_residues
MLSTQIARYVSLYRSLGRKFSEQERLLRQYAAFAERFGDRHTRVQRIYDWCHTASSQNVARHRYDAARNFSLFAHAEDPD
NEVPPVGVFGRGKRPRPTPTIIEADQVRAIMAAALNVPPHGTISPYTYHYLFGLLAATGLRISEALALQCNDLVEDGLVV
RNGKFGKQRLIALQPSTRQALEAYIAIRAKHPAKCNDLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLR
HTFAVRSLESCPRDREAIAHHMAGLSVYLGHASIANTYWYLEATPVLLRDIAAASEQLFQGEAA
>Mature_304_residues
MLSTQIARYVSLYRSLGRKFSEQERLLRQYAAFAERFGDRHTRVQRIYDWCHTASSQNVARHRYDAARNFSLFAHAEDPD
NEVPPVGVFGRGKRPRPTPTIIEADQVRAIMAAALNVPPHGTISPYTYHYLFGLLAATGLRISEALALQCNDLVEDGLVV
RNGKFGKQRLIALQPSTRQALEAYIAIRAKHPAKCNDLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLR
HTFAVRSLESCPRDREAIAHHMAGLSVYLGHASIANTYWYLEATPVLLRDIAAASEQLFQGEAA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34053; Mature: 34053

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTQIARYVSLYRSLGRKFSEQERLLRQYAAFAERFGDRHTRVQRIYDWCHTASSQNVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHH
RHRYDAARNFSLFAHAEDPDNEVPPVGVFGRGKRPRPTPTIIEADQVRAIMAAALNVPPH
HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC
GTISPYTYHYLFGLLAATGLRISEALALQCNDLVEDGLVVRNGKFGKQRLIALQPSTRQA
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCHHHH
LEAYIAIRAKHPAKCNDLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLR
HHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
HTFAVRSLESCPRDREAIAHHMAGLSVYLGHASIANTYWYLEATPVLLRDIAAASEQLFQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHEECCHHHHCEEEEEECCHHHHHHHHHHHHHHHC
GEAA
CCCC
>Mature Secondary Structure
MLSTQIARYVSLYRSLGRKFSEQERLLRQYAAFAERFGDRHTRVQRIYDWCHTASSQNVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHH
RHRYDAARNFSLFAHAEDPDNEVPPVGVFGRGKRPRPTPTIIEADQVRAIMAAALNVPPH
HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC
GTISPYTYHYLFGLLAATGLRISEALALQCNDLVEDGLVVRNGKFGKQRLIALQPSTRQA
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCHHHH
LEAYIAIRAKHPAKCNDLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLR
HHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
HTFAVRSLESCPRDREAIAHHMAGLSVYLGHASIANTYWYLEATPVLLRDIAAASEQLFQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHEECCHHHHCEEEEEECCHHHHHHHHHHHHHHHC
GEAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]