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The map label for this gene is yomI [H]

Identifier: 103485936

GI number: 103485936

Start: 453990

End: 454646

Strand: Direct

Name: yomI [H]

Synonym: Sala_0443

Alternate gene names: 103485936

Gene position: 453990-454646 (Clockwise)

Preceding gene: 103485933

Following gene: 103485942

Centisome position: 13.57

GC content: 60.73

Gene sequence:

>657_bases
ATGACAATCAAAACTCTCTTGATCGCAGGCATCGCGATCACCTCTGCTATCCCGGCCAGTGCCCAGGAGTTGCCAACGCC
AGCAACAATCGAAGCAACCGCCAGCCACTCCGACGGCATTCGGATTGCTAAAACATCGAATGGCTTCCAGCTGGTCGAGC
ATGGGCTCTGGCGATCTGCCCAAGACGGCCCGGCGCCTGTTGTGACTGTGCCGCGAACTGGTCGGGTCAACCTGCCCTAC
AGATACGAGCGGAATCCCCAACCTGGCCCATCCGGCTTCAGGCGAGCAAGCTACCTTCCCCACATCTATGCGGCAGAAGC
GAAGTACTCATTGCCCGCGGGCCTGCTCGATGCGCTCGTTTGGACGGAATCTCGCTACAACCCTTTGGCGGTCAGTCCGG
CGGGTGCCGCGGGCCTTGGGCAGCTGATGCCCGCAACGGCAAAGGAACTCGGGGTCTTCAACCGATTTGACCCCATGGCT
AACATCTTCGGCGCTGCGCGGTATCTCCGGCAGATGCTCGACAGGTTTGGCGTGGTTCACCTTGCGGTCGCTGCCTACAA
TGCCGGTCCAAGGGCAGTTGAACGCGCAGGTGGCATTCCCCGCAATGGCGAAACACCCGGATATGTCCGCGACGTCCTGC
GGCACTGGCAGTTTTAG

Upstream 100 bases:

>100_bases
TCCCCGCGCAGCCTCCGCTCTGCACTTGCGCCAAACCAATTTCCTACGTCGGTTGTTCTTTATATGTTCCCACTCGATTC
GACTAGACAAGGATCGAGAA

Downstream 100 bases:

>100_bases
TACGAACTGCACCGAGTGGCACTTGATCGGATTGAATGCTTCTACTCACGGGCGTCACGCAGCCCGCTTTCGTCCCTTCC
TGATGTCGAGCACCTTGCGC

Product: lytic transglycosylase, catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTIKTLLIAGIAITSAIPASAQELPTPATIEATASHSDGIRIAKTSNGFQLVEHGLWRSAQDGPAPVVTVPRTGRVNLPY
RYERNPQPGPSGFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPLAVSPAGAAGLGQLMPATAKELGVFNRFDPMA
NIFGAARYLRQMLDRFGVVHLAVAAYNAGPRAVERAGGIPRNGETPGYVRDVLRHWQF

Sequences:

>Translated_218_residues
MTIKTLLIAGIAITSAIPASAQELPTPATIEATASHSDGIRIAKTSNGFQLVEHGLWRSAQDGPAPVVTVPRTGRVNLPY
RYERNPQPGPSGFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPLAVSPAGAAGLGQLMPATAKELGVFNRFDPMA
NIFGAARYLRQMLDRFGVVHLAVAAYNAGPRAVERAGGIPRNGETPGYVRDVLRHWQF
>Mature_217_residues
TIKTLLIAGIAITSAIPASAQELPTPATIEATASHSDGIRIAKTSNGFQLVEHGLWRSAQDGPAPVVTVPRTGRVNLPYR
YERNPQPGPSGFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPLAVSPAGAAGLGQLMPATAKELGVFNRFDPMAN
IFGAARYLRQMLDRFGVVHLAVAAYNAGPRAVERAGGIPRNGETPGYVRDVLRHWQF

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 23487; Mature: 23356

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKTLLIAGIAITSAIPASAQELPTPATIEATASHSDGIRIAKTSNGFQLVEHGLWRSA
CCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCC
QDGPAPVVTVPRTGRVNLPYRYERNPQPGPSGFRRASYLPHIYAAEAKYSLPAGLLDALV
CCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHH
WTESRYNPLAVSPAGAAGLGQLMPATAKELGVFNRFDPMANIFGAARYLRQMLDRFGVVH
HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAYNAGPRAVERAGGIPRNGETPGYVRDVLRHWQF
HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TIKTLLIAGIAITSAIPASAQELPTPATIEATASHSDGIRIAKTSNGFQLVEHGLWRSA
CHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCC
QDGPAPVVTVPRTGRVNLPYRYERNPQPGPSGFRRASYLPHIYAAEAKYSLPAGLLDALV
CCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHH
WTESRYNPLAVSPAGAAGLGQLMPATAKELGVFNRFDPMANIFGAARYLRQMLDRFGVVH
HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAYNAGPRAVERAGGIPRNGETPGYVRDVLRHWQF
HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]