Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is cls [H]
Identifier: 103485881
GI number: 103485881
Start: 398363
End: 399766
Strand: Direct
Name: cls [H]
Synonym: Sala_0386
Alternate gene names: 103485881
Gene position: 398363-399766 (Clockwise)
Preceding gene: 103485880
Following gene: 103485882
Centisome position: 11.91
GC content: 57.69
Gene sequence:
>1404_bases ATGATATTTTCAATCGCGGTGATCGCTGCGATTGCCACGGCCAGCCACGCGATCATCCACAAGCGCGACCCGCGATCGGC GACCATCTGGCTGCTAGTGGTTGCTCTTGTCCCTCTAGGCGGCTCACTTTGCTACCTTTTATTTGGGATAAATCGGGTTA ACCGCAAAGCAATGCGGCTACGCGCGGCGCGCCCAGCGAAAAGCGAACTTTCCAATCTAGGTTCGGCGGGCATGGATTTG CCGCCTCATCTGGCCAGTCTTGCGCGTCTCGGGCGAGACGTGTCAGGCAAAGAACTGTTGCCCGGAAATCGCTGCACCCC CCTTTTTGGGGGCACAGAGGCCTACCCGCAAATGCTTCAGGCGATTTGCGAAGCGAAGCATTCTATCGCCCTTGCCTCGT ACATTTTCGAGGGCAAGGGGATCGGGGCGCTTTTCGTCGATACCCTCGCGCAAGCGCGGTCGCGCGGAGTGAGCGTCAAG GTCCTGATCGATGATGCCTATGCCAGGTTATCCAACTCGGACGCCTACGGAGCATTGCGGCTTCACGGTATTGATGTCGC CCTGTTCAATCCCCCTGTGATACCGGCACGCCTGCACGGGTTGCATCTGCGCAACCATCGCAAACTGCTCATCGTTGACG GGTACCGGGGCTTTACCGGCGGCATGAACATCCATAGGCCCTATTGGTGTCCCAAGGCCCCGGAAAGCGCTTTCCGCGAT CTGCACCTTGAGGTTTCGGGTCCGGTCGTCGGGCAAATGCGGGAAACCTTCGAGCGGGACTGGTACGATAGCAAGGAAGA AGAGCTGGACGAAAGCTTCTGGACTGGCAAATCGGGCGGTCCGATCACCGACGGATTTAGCCTTGCGCGCGGGATCGAAT CCGGACCTGACGAAACGCTGGACCGGATGCGGTGGATTTTCATAGGCGCAATCAATGCCGCTCAGAAAAAGATTTCCATC CGCACACCTTATTTCCTGCCTGACCAGCCTACTATTGCCGCGCTGGGCGCAGCCGCTTTGCGAGGGGTTCGGGTCGAGAT CGTGGTCCCGCGAAACAGCGACCATCTGTTCGTGCAATGGGCATCTAAGGCGCATTACTGGCAGATAATCGAACACGGTG TCTGCATTTATGAGCGCCCCGGCCCGTTCGATCATGGCAAGCTGATGATAATTGACGATGCCTGGGTGTGTGTCGGCTCC GCCAACTGGGATGCGCGTAGCCTGCGCCTGAACTTCGAATTCAACCTGGAAATTTACGATCGCAGGCTGGCGCTGGAGCT TGGTGACGATTTCGCCCGAATCAGGTCTGCGTCGAAGAAAGTGAGGCCGACCGACCTGTCTGACATGCCGTATTTCGTGA AACTGCGAAATGGCTTTGCGCGGCTGTTTTCGCCGATCCTTTGA
Upstream 100 bases:
>100_bases CGTGGGAAGAAATTTTCCGAAGCAAAGGTTGCCGCTGCTGCCGTCAGGCACCGATGCGTACCGGGGTATGAACATTCCTG AAACTACGTCGTTTAGCTGG
Downstream 100 bases:
>100_bases AACTGGCGGAAAGCGATAATGGAAGAACTCTTTTTCTCTGTGTTCATTCTCTTTGCTTCCATCCTGGTGGCCGGCTTGCT GTTTCATCTCATGAAGGCTC
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: CL synthase [H]
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MIFSIAVIAAIATASHAIIHKRDPRSATIWLLVVALVPLGGSLCYLLFGINRVNRKAMRLRAARPAKSELSNLGSAGMDL PPHLASLARLGRDVSGKELLPGNRCTPLFGGTEAYPQMLQAICEAKHSIALASYIFEGKGIGALFVDTLAQARSRGVSVK VLIDDAYARLSNSDAYGALRLHGIDVALFNPPVIPARLHGLHLRNHRKLLIVDGYRGFTGGMNIHRPYWCPKAPESAFRD LHLEVSGPVVGQMRETFERDWYDSKEEELDESFWTGKSGGPITDGFSLARGIESGPDETLDRMRWIFIGAINAAQKKISI RTPYFLPDQPTIAALGAAALRGVRVEIVVPRNSDHLFVQWASKAHYWQIIEHGVCIYERPGPFDHGKLMIIDDAWVCVGS ANWDARSLRLNFEFNLEIYDRRLALELGDDFARIRSASKKVRPTDLSDMPYFVKLRNGFARLFSPIL
Sequences:
>Translated_467_residues MIFSIAVIAAIATASHAIIHKRDPRSATIWLLVVALVPLGGSLCYLLFGINRVNRKAMRLRAARPAKSELSNLGSAGMDL PPHLASLARLGRDVSGKELLPGNRCTPLFGGTEAYPQMLQAICEAKHSIALASYIFEGKGIGALFVDTLAQARSRGVSVK VLIDDAYARLSNSDAYGALRLHGIDVALFNPPVIPARLHGLHLRNHRKLLIVDGYRGFTGGMNIHRPYWCPKAPESAFRD LHLEVSGPVVGQMRETFERDWYDSKEEELDESFWTGKSGGPITDGFSLARGIESGPDETLDRMRWIFIGAINAAQKKISI RTPYFLPDQPTIAALGAAALRGVRVEIVVPRNSDHLFVQWASKAHYWQIIEHGVCIYERPGPFDHGKLMIIDDAWVCVGS ANWDARSLRLNFEFNLEIYDRRLALELGDDFARIRSASKKVRPTDLSDMPYFVKLRNGFARLFSPIL >Mature_467_residues MIFSIAVIAAIATASHAIIHKRDPRSATIWLLVVALVPLGGSLCYLLFGINRVNRKAMRLRAARPAKSELSNLGSAGMDL PPHLASLARLGRDVSGKELLPGNRCTPLFGGTEAYPQMLQAICEAKHSIALASYIFEGKGIGALFVDTLAQARSRGVSVK VLIDDAYARLSNSDAYGALRLHGIDVALFNPPVIPARLHGLHLRNHRKLLIVDGYRGFTGGMNIHRPYWCPKAPESAFRD LHLEVSGPVVGQMRETFERDWYDSKEEELDESFWTGKSGGPITDGFSLARGIESGPDETLDRMRWIFIGAINAAQKKISI RTPYFLPDQPTIAALGAAALRGVRVEIVVPRNSDHLFVQWASKAHYWQIIEHGVCIYERPGPFDHGKLMIIDDAWVCVGS ANWDARSLRLNFEFNLEIYDRRLALELGDDFARIRSASKKVRPTDLSDMPYFVKLRNGFARLFSPIL
Specific function: Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PLD phosphodiesterase domains [H]
Homologues:
Organism=Escherichia coli, GI1787502, Length=472, Percent_Identity=28.3898305084746, Blast_Score=161, Evalue=7e-41, Organism=Escherichia coli, GI1787007, Length=350, Percent_Identity=28, Blast_Score=119, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022924 - InterPro: IPR001736 [H]
Pfam domain/function: PF00614 PLDc [H]
EC number: 2.7.8.-
Molecular weight: Translated: 51851; Mature: 51851
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFSIAVIAAIATASHAIIHKRDPRSATIWLLVVALVPLGGSLCYLLFGINRVNRKAMRL CEEHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RAARPAKSELSNLGSAGMDLPPHLASLARLGRDVSGKELLPGNRCTPLFGGTEAYPQMLQ HHCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AICEAKHSIALASYIFEGKGIGALFVDTLAQARSRGVSVKVLIDDAYARLSNSDAYGALR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCEEEE LHGIDVALFNPPVIPARLHGLHLRNHRKLLIVDGYRGFTGGMNIHRPYWCPKAPESAFRD EEEEEEEEECCCCCCHHHCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHE LHLEVSGPVVGQMRETFERDWYDSKEEELDESFWTGKSGGPITDGFSLARGIESGPDETL EEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHH DRMRWIFIGAINAAQKKISIRTPYFLPDQPTIAALGAAALRGVRVEIVVPRNSDHLFVQW HHEEEEEEEECHHHHHEEEEECCEECCCCCHHHHHHHHHHCCEEEEEEEECCCCEEEEEE ASKAHYWQIIEHGVCIYERPGPFDHGKLMIIDDAWVCVGSANWDARSLRLNFEFNLEIYD CCCCHHHHHHHCCEEEEECCCCCCCCEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEE RRLALELGDDFARIRSASKKVRPTDLSDMPYFVKLRNGFARLFSPIL EEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCC >Mature Secondary Structure MIFSIAVIAAIATASHAIIHKRDPRSATIWLLVVALVPLGGSLCYLLFGINRVNRKAMRL CEEHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RAARPAKSELSNLGSAGMDLPPHLASLARLGRDVSGKELLPGNRCTPLFGGTEAYPQMLQ HHCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AICEAKHSIALASYIFEGKGIGALFVDTLAQARSRGVSVKVLIDDAYARLSNSDAYGALR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCEEEE LHGIDVALFNPPVIPARLHGLHLRNHRKLLIVDGYRGFTGGMNIHRPYWCPKAPESAFRD EEEEEEEEECCCCCCHHHCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHE LHLEVSGPVVGQMRETFERDWYDSKEEELDESFWTGKSGGPITDGFSLARGIESGPDETL EEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHH DRMRWIFIGAINAAQKKISIRTPYFLPDQPTIAALGAAALRGVRVEIVVPRNSDHLFVQW HHEEEEEEEECHHHHHEEEEECCEECCCCCHHHHHHHHHHCCEEEEEEEECCCCEEEEEE ASKAHYWQIIEHGVCIYERPGPFDHGKLMIIDDAWVCVGSANWDARSLRLNFEFNLEIYD CCCCHHHHHHHCCEEEEECCCCCCCCEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEE RRLALELGDDFARIRSASKKVRPTDLSDMPYFVKLRNGFARLFSPIL EEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9443601 [H]