Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485855
Identifier: 103485855
GI number: 103485855
Start: 371738
End: 373411
Strand: Direct
Name: 103485855
Synonym: Sala_0360
Alternate gene names: NA
Gene position: 371738-373411 (Clockwise)
Preceding gene: 103485854
Following gene: 103485856
Centisome position: 11.11
GC content: 68.7
Gene sequence:
>1674_bases ATGAGCGCCGCGATGTTTATCGAAGCGTGGAGCGACACGCTGCTCACGACTGCGCTGCTCGTCGTCGCGGTGTTGCTGAT CCGCAAGCCCTTTGCCCGTCATTTCGGCGCGCGGCTGACCTATGGGCTGTGGGCGATCCCCGCGCTGCGGCTCGTGCTGC CGCCGCTTCCCTTTGCCGACCCGGTGACGGCGCCCGTCGTGATGCCGGTCGAGACGGGGACGACGCTGGCGCTGACACTC GATGGCGGCGCGACGGTCGAAGCCGTGACGCCTGCCTGGACGCTGGCCGACGTCATGCCGTGGCTAGTCGTGCCGTGGGC CGCGGGCATGATCGCGGTGATCGGTGCTGCGATGCTGGCGCACCGGCGCTTTCGCGCCGCGGTGCTGACGGACGCGGTCG AGCTGGAACCCATCGGGTCGATCCGGCTGGTGATGACCGACGCCGTCGACGGGCCGGTGGCGTTCGGCCTGTTGCACCGC GTCGTCGCGGTGCCGCAGGATTTCTTTGCCCGCTATGCTGCCGAAGAGCGCGCGCTCGCGGTCGATCACGAGCTGTCGCA TCACCGCCACGGCGACCTGTGGGCCAATGCGGCCGCGCTGGTGCTGCTCGCGTCGCAATGGTTCAATCCCTTTGCCTGGC GCGCGATCCGCGCCTTTCAGTTCGACCAGGAGGCGGCGTGCGACGCGCGCGTGCTGACGATGGCCGATGACGCGGCGCGG CACGACCGCGCGGCCAATTATGCCACCGCGATCGTCAAGGCCGCGGTCGGCCCCCGGCTGGCGCTCACCGCGCCGATGGC GGTCCACGATAATCTGCAGGAGAGGCTGACGATGTTGACGAAGCGTGATATTTCGAAGCGGCGCGGCCTGGCCGGCCGGT TGCTGATCGGTGGCGCGGCGCTCGCGGTGCTCGGCGCGACCGCGACGCTGGTTCCGTCGGGGATGGCCGCAGCGACGACG CAACCCGGCGATATTCCGGCACCGCCCGCGCCGCCGCCTGCGCCCGATGCGCCGCCGCCGCCCGAAGCCCCCGATGCGCC CGAGGTGATGGTCTTTACCGGCAGCGACGAAGCGGTGAGCGAAACGGTTACGACCTCCGACGACGGCAAGACACGCGAAG TGCGCCGCATCGTGATCCGCCATGACCATGACAAGGATGGCAAGACGGCCGATGCGTCCGCCGATCACCAGAAAAAGGCG CAGCGTTTCGAGTTTCACATTCCGGGCGGCCTGTCGCGCGAGGATGTGCTCGCGACGCTGAAGGAACAGGGCATCACCGG CGCGCGCGCCGATGTGATCGCCGACAGGCTGGAGGCGAAACGCAAGGAACGGCTCCGCGTCGCGCTGGCGCCGATGCCGC CGATGCCTGCGATCCCGCCGATGTCCTGGTCGGCCGACGGCAAGGCCATGGTGCTCGGCAAGTGCCGCGACGGCAGCAAG GCGGCGCCGATCGTCGACCGGAAGCATAGCGAAGGCGGCAAGCGCAGCCATGTCGTCATGTTCGGCTGCGGCGATTCGGG GGAAATCCGGGCGTTACGCCTGTCGGCGCTCGAAAAGACGCGCGAAGCCTTCGTCGAGGGCGAACGGGCGCGCGGACTGT CGGAAGAAATGCGCGCGAAGGTGATCGCCGACATCGACAAGGCCATCGCCGAAATCAAGAAATCGGACGAATAG
Upstream 100 bases:
>100_bases GCGGCCGCGTCAGCCCGCTGATCGCACACCTCGCCGATCGTGAGGCGCTGAGCGATGCCGACATCGCCGAGATCGAGGCG CTTTTGAAGAAGCTCAAGTC
Downstream 100 bases:
>100_bases CGCCGCACGGGCTTCGATGCCGGTCCTTGCTCCCCGGTGGGGCCGGCGACAGGGGCGGGGAAAGGGAGCGGGCAACCGCT CCCTTTTTCACGCTGATGAC
Product: peptidase M56, BlaR1
Products: NA
Alternate protein names: NB-Like Protein; Peptidase
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MSAAMFIEAWSDTLLTTALLVVAVLLIRKPFARHFGARLTYGLWAIPALRLVLPPLPFADPVTAPVVMPVETGTTLALTL DGGATVEAVTPAWTLADVMPWLVVPWAAGMIAVIGAAMLAHRRFRAAVLTDAVELEPIGSIRLVMTDAVDGPVAFGLLHR VVAVPQDFFARYAAEERALAVDHELSHHRHGDLWANAAALVLLASQWFNPFAWRAIRAFQFDQEAACDARVLTMADDAAR HDRAANYATAIVKAAVGPRLALTAPMAVHDNLQERLTMLTKRDISKRRGLAGRLLIGGAALAVLGATATLVPSGMAAATT QPGDIPAPPAPPPAPDAPPPPEAPDAPEVMVFTGSDEAVSETVTTSDDGKTREVRRIVIRHDHDKDGKTADASADHQKKA QRFEFHIPGGLSREDVLATLKEQGITGARADVIADRLEAKRKERLRVALAPMPPMPAIPPMSWSADGKAMVLGKCRDGSK AAPIVDRKHSEGGKRSHVVMFGCGDSGEIRALRLSALEKTREAFVEGERARGLSEEMRAKVIADIDKAIAEIKKSDE
Sequences:
>Translated_557_residues MSAAMFIEAWSDTLLTTALLVVAVLLIRKPFARHFGARLTYGLWAIPALRLVLPPLPFADPVTAPVVMPVETGTTLALTL DGGATVEAVTPAWTLADVMPWLVVPWAAGMIAVIGAAMLAHRRFRAAVLTDAVELEPIGSIRLVMTDAVDGPVAFGLLHR VVAVPQDFFARYAAEERALAVDHELSHHRHGDLWANAAALVLLASQWFNPFAWRAIRAFQFDQEAACDARVLTMADDAAR HDRAANYATAIVKAAVGPRLALTAPMAVHDNLQERLTMLTKRDISKRRGLAGRLLIGGAALAVLGATATLVPSGMAAATT QPGDIPAPPAPPPAPDAPPPPEAPDAPEVMVFTGSDEAVSETVTTSDDGKTREVRRIVIRHDHDKDGKTADASADHQKKA QRFEFHIPGGLSREDVLATLKEQGITGARADVIADRLEAKRKERLRVALAPMPPMPAIPPMSWSADGKAMVLGKCRDGSK AAPIVDRKHSEGGKRSHVVMFGCGDSGEIRALRLSALEKTREAFVEGERARGLSEEMRAKVIADIDKAIAEIKKSDE >Mature_556_residues SAAMFIEAWSDTLLTTALLVVAVLLIRKPFARHFGARLTYGLWAIPALRLVLPPLPFADPVTAPVVMPVETGTTLALTLD GGATVEAVTPAWTLADVMPWLVVPWAAGMIAVIGAAMLAHRRFRAAVLTDAVELEPIGSIRLVMTDAVDGPVAFGLLHRV VAVPQDFFARYAAEERALAVDHELSHHRHGDLWANAAALVLLASQWFNPFAWRAIRAFQFDQEAACDARVLTMADDAARH DRAANYATAIVKAAVGPRLALTAPMAVHDNLQERLTMLTKRDISKRRGLAGRLLIGGAALAVLGATATLVPSGMAAATTQ PGDIPAPPAPPPAPDAPPPPEAPDAPEVMVFTGSDEAVSETVTTSDDGKTREVRRIVIRHDHDKDGKTADASADHQKKAQ RFEFHIPGGLSREDVLATLKEQGITGARADVIADRLEAKRKERLRVALAPMPPMPAIPPMSWSADGKAMVLGKCRDGSKA APIVDRKHSEGGKRSHVVMFGCGDSGEIRALRLSALEKTREAFVEGERARGLSEEMRAKVIADIDKAIAEIKKSDE
Specific function: Unknown
COG id: COG4219
COG function: function code KT; Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59694; Mature: 59562
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAMFIEAWSDTLLTTALLVVAVLLIRKPFARHFGARLTYGLWAIPALRLVLPPLPFAD CCCEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC PVTAPVVMPVETGTTLALTLDGGATVEAVTPAWTLADVMPWLVVPWAAGMIAVIGAAMLA CCCCCEEEEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HRRFRAAVLTDAVELEPIGSIRLVMTDAVDGPVAFGLLHRVVAVPQDFFARYAAEERALA HHHHHHHHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEE VDHELSHHRHGDLWANAAALVLLASQWFNPFAWRAIRAFQFDQEAACDARVLTMADDAAR ECHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHCCCEEEEEECCHHHH HDRAANYATAIVKAAVGPRLALTAPMAVHDNLQERLTMLTKRDISKRRGLAGRLLIGGAA HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH LAVLGATATLVPSGMAAATTQPGDIPAPPAPPPAPDAPPPPEAPDAPEVMVFTGSDEAVS HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH ETVTTSDDGKTREVRRIVIRHDHDKDGKTADASADHQKKAQRFEFHIPGGLSREDVLATL HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCHHHHHHHH KEQGITGARADVIADRLEAKRKERLRVALAPMPPMPAIPPMSWSADGKAMVLGKCRDGSK HHCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCC AAPIVDRKHSEGGKRSHVVMFGCGDSGEIRALRLSALEKTREAFVEGERARGLSEEMRAK CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHCCHHHCCCHHHHHHH VIADIDKAIAEIKKSDE HHHHHHHHHHHHHCCCC >Mature Secondary Structure SAAMFIEAWSDTLLTTALLVVAVLLIRKPFARHFGARLTYGLWAIPALRLVLPPLPFAD CCEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC PVTAPVVMPVETGTTLALTLDGGATVEAVTPAWTLADVMPWLVVPWAAGMIAVIGAAMLA CCCCCEEEEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HRRFRAAVLTDAVELEPIGSIRLVMTDAVDGPVAFGLLHRVVAVPQDFFARYAAEERALA HHHHHHHHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEE VDHELSHHRHGDLWANAAALVLLASQWFNPFAWRAIRAFQFDQEAACDARVLTMADDAAR ECHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHCCCEEEEEECCHHHH HDRAANYATAIVKAAVGPRLALTAPMAVHDNLQERLTMLTKRDISKRRGLAGRLLIGGAA HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH LAVLGATATLVPSGMAAATTQPGDIPAPPAPPPAPDAPPPPEAPDAPEVMVFTGSDEAVS HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH ETVTTSDDGKTREVRRIVIRHDHDKDGKTADASADHQKKAQRFEFHIPGGLSREDVLATL HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCHHHHHHHH KEQGITGARADVIADRLEAKRKERLRVALAPMPPMPAIPPMSWSADGKAMVLGKCRDGSK HHCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCC AAPIVDRKHSEGGKRSHVVMFGCGDSGEIRALRLSALEKTREAFVEGERARGLSEEMRAK CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHCCHHHCCCHHHHHHH VIADIDKAIAEIKKSDE HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA