Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is atsA [H]
Identifier: 103485797
GI number: 103485797
Start: 301155
End: 302786
Strand: Direct
Name: atsA [H]
Synonym: Sala_0302
Alternate gene names: 103485797
Gene position: 301155-302786 (Clockwise)
Preceding gene: 103485794
Following gene: 103485798
Centisome position: 9.0
GC content: 66.97
Gene sequence:
>1632_bases ATGGCCAATAAATGGGTGGCGCTGGGTGCCATGACGCTGGCGGCGGTCGGTGGCTATTGGGCCTATGACGCGAACAAATA TCGCATCCCCGGCATCGTGCAGGACTGGCGCGAGCCGGTGCAGCCGAACCGGGCGATCGCGTGGCAGCAAGGGCCGGCGG CGGCGCCGGAGGGCGCGCGGCCGCCGAACATCATCCTGATCGTCGCCGACGACCTGGGCTATAACGACATCAGCCTGAAC GGCGGCGGCGTCGCGGGGATCGTCAAGACGCCGAACATCGATGCGCTGGCGCGTGAGGGGGTCCATTTCACCACCGCCTA TGCCGCCAACGCGACCTGCTCGCCCTCGCGCGCGGCGATGATGACGGGGCGCTATCCGACGCGCTTCGGCTTCGAGTTCA CCGCGGTGCCGATCGAGTTCGCCGAAAATCTGGCGCATGGCGAGGGTGTCGGGCCGCACCGCGCGATCTTTCACGACGAA CTGGTGACGCCCGACATCCCGCCCTATCCCCAGATGGGGGTGCCCGCGAGCGAGGTGACAATTGCCGAAGCGGTGAAGGC GGCGGGCTATCACACGGTTCACATCGGCAAATGGCATCTGGGCGAAGCCCCCGAATTGCAGCCGCACGCCCAGGGCTTCG ACGAAAGCCTGGCGGTGCTGGCGGGCGCGGCAATGCTGCTGCCCGAGGATGACCCCGACGCAGTCAACGCCAAGCTGCCG TGGGATCCGATCGACCGCTTCATCTGGGCCAATCTGCGCCACGCAGTGACCTTCAACGGCAGCAAGCGGTTTGCCGCGCA GGGGCATATGACCGACTATTTCGCCGACGAGGCGATCAAGGCGATCGAAGCGAACCGGAACCGGCCCTTTTTCCTCTATC TTGCCTTCACCGCGCCGCACACGCCGCTGCAGGCGACGCGCGCCGATTATGACCGGCTCGCGGCGATCAAGGATCACAGG ACGCGCGTTTATGGCGCGATGATCGCGCAGATGGACCGGCGGATCGGCGACGTGATGGCCAAGCTGAAGGAGGCCGGGAT CGACGACAATACGCTCGTCATCTTCACCAGCGACAATGGCGGCGCCTGGTACAACGGGATGCCGGGGCTGAATGCGCCGT TCCGCGGGTGGAAAGCGACCTTTTTCGAAGGCGGCATCCGGGCGCCGCTGTTCATGCGCTGGCCAGCGCGCATCGCGCCG GGGACCGAGCGCGGCGACGTGACGGGCCATCTCGACCTTTTCGCGACGATTGCCGCCGCGGCGGGCGCGGCGCTGCCCGC GGACCGGACGATCGACAGCGAGGATATATTGGCCGGTCCCGCCAAGCGTCCGGCGATGTTCTGGCGCTCGGGCGATTATC GCGCGGTGCGCGCGGGCGACTGGAAATTGCAGGTGACGAAGCGACCCGAAAAGGCGCGCCTCTATAACCTTGCCGCCGAT CCGACCGAACGGACCGACCTGTCGGCGCGCGAGCCGGCGCGCGTCGCCGAACTCGGCGCGATGATCGAGGCGCAGAACCG GGGCATGGCGACGCCGATCTGGCCGGGGTTGGTCGAAGGGCCGGTGCGCATCGACGTGCCGCTGAACACGCCGTGGCAGG ACGGGCAGGATTATATCTATTGGACCAACTGA
Upstream 100 bases:
>100_bases GCCGCCGACGTCAAACGATCTTGCACTTCGGCGAATATAATGACACATATAGTGCCAATAGTTTTCGGGCAAGCCGAAGC GGCGGGTGAAGGGAGCGGGC
Downstream 100 bases:
>100_bases TCGCGTCTGACCGCTTGTGAAACAAGGCCGCCGCACGTTAAGGGGCGGGGATGGCAAAGGGATCGGGGTCCAATGGCGGC GGCAACGCGCGCCCGACGAT
Product: sulfatase
Products: NA
Alternate protein names: AS; Aryl-sulfate sulphohydrolase [H]
Number of amino acids: Translated: 543; Mature: 542
Protein sequence:
>543_residues MANKWVALGAMTLAAVGGYWAYDANKYRIPGIVQDWREPVQPNRAIAWQQGPAAAPEGARPPNIILIVADDLGYNDISLN GGGVAGIVKTPNIDALAREGVHFTTAYAANATCSPSRAAMMTGRYPTRFGFEFTAVPIEFAENLAHGEGVGPHRAIFHDE LVTPDIPPYPQMGVPASEVTIAEAVKAAGYHTVHIGKWHLGEAPELQPHAQGFDESLAVLAGAAMLLPEDDPDAVNAKLP WDPIDRFIWANLRHAVTFNGSKRFAAQGHMTDYFADEAIKAIEANRNRPFFLYLAFTAPHTPLQATRADYDRLAAIKDHR TRVYGAMIAQMDRRIGDVMAKLKEAGIDDNTLVIFTSDNGGAWYNGMPGLNAPFRGWKATFFEGGIRAPLFMRWPARIAP GTERGDVTGHLDLFATIAAAAGAALPADRTIDSEDILAGPAKRPAMFWRSGDYRAVRAGDWKLQVTKRPEKARLYNLAAD PTERTDLSAREPARVAELGAMIEAQNRGMATPIWPGLVEGPVRIDVPLNTPWQDGQDYIYWTN
Sequences:
>Translated_543_residues MANKWVALGAMTLAAVGGYWAYDANKYRIPGIVQDWREPVQPNRAIAWQQGPAAAPEGARPPNIILIVADDLGYNDISLN GGGVAGIVKTPNIDALAREGVHFTTAYAANATCSPSRAAMMTGRYPTRFGFEFTAVPIEFAENLAHGEGVGPHRAIFHDE LVTPDIPPYPQMGVPASEVTIAEAVKAAGYHTVHIGKWHLGEAPELQPHAQGFDESLAVLAGAAMLLPEDDPDAVNAKLP WDPIDRFIWANLRHAVTFNGSKRFAAQGHMTDYFADEAIKAIEANRNRPFFLYLAFTAPHTPLQATRADYDRLAAIKDHR TRVYGAMIAQMDRRIGDVMAKLKEAGIDDNTLVIFTSDNGGAWYNGMPGLNAPFRGWKATFFEGGIRAPLFMRWPARIAP GTERGDVTGHLDLFATIAAAAGAALPADRTIDSEDILAGPAKRPAMFWRSGDYRAVRAGDWKLQVTKRPEKARLYNLAAD PTERTDLSAREPARVAELGAMIEAQNRGMATPIWPGLVEGPVRIDVPLNTPWQDGQDYIYWTN >Mature_542_residues ANKWVALGAMTLAAVGGYWAYDANKYRIPGIVQDWREPVQPNRAIAWQQGPAAAPEGARPPNIILIVADDLGYNDISLNG GGVAGIVKTPNIDALAREGVHFTTAYAANATCSPSRAAMMTGRYPTRFGFEFTAVPIEFAENLAHGEGVGPHRAIFHDEL VTPDIPPYPQMGVPASEVTIAEAVKAAGYHTVHIGKWHLGEAPELQPHAQGFDESLAVLAGAAMLLPEDDPDAVNAKLPW DPIDRFIWANLRHAVTFNGSKRFAAQGHMTDYFADEAIKAIEANRNRPFFLYLAFTAPHTPLQATRADYDRLAAIKDHRT RVYGAMIAQMDRRIGDVMAKLKEAGIDDNTLVIFTSDNGGAWYNGMPGLNAPFRGWKATFFEGGIRAPLFMRWPARIAPG TERGDVTGHLDLFATIAAAAGAALPADRTIDSEDILAGPAKRPAMFWRSGDYRAVRAGDWKLQVTKRPEKARLYNLAADP TERTDLSAREPARVAELGAMIEAQNRGMATPIWPGLVEGPVRIDVPLNTPWQDGQDYIYWTN
Specific function: Unknown
COG id: COG3119
COG function: function code P; Arylsulfatase A and related enzymes
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfatase family [H]
Homologues:
Organism=Homo sapiens, GI4503899, Length=425, Percent_Identity=32.9411764705882, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI146229331, Length=475, Percent_Identity=32.2105263157895, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI146229329, Length=475, Percent_Identity=32.2105263157895, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI6005990, Length=475, Percent_Identity=32.2105263157895, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI146229324, Length=475, Percent_Identity=32.2105263157895, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI59797060, Length=506, Percent_Identity=27.4703557312253, Blast_Score=161, Evalue=1e-39, Organism=Homo sapiens, GI109389362, Length=513, Percent_Identity=26.7056530214425, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI38569405, Length=524, Percent_Identity=26.9083969465649, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI38569407, Length=393, Percent_Identity=29.5165394402036, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI157266309, Length=456, Percent_Identity=28.0701754385965, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI45430057, Length=400, Percent_Identity=29.75, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI146229327, Length=367, Percent_Identity=31.0626702997275, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI53831991, Length=293, Percent_Identity=29.3515358361775, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI58743319, Length=140, Percent_Identity=40.7142857142857, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI31742482, Length=159, Percent_Identity=37.7358490566038, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI71852586, Length=143, Percent_Identity=37.0629370629371, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI71852584, Length=143, Percent_Identity=37.0629370629371, Blast_Score=80, Evalue=4e-15, Organism=Escherichia coli, GI87081924, Length=534, Percent_Identity=25.6554307116105, Blast_Score=153, Evalue=3e-38, Organism=Escherichia coli, GI1790233, Length=537, Percent_Identity=27.7467411545624, Blast_Score=136, Evalue=3e-33, Organism=Caenorhabditis elegans, GI115533416, Length=508, Percent_Identity=28.1496062992126, Blast_Score=154, Evalue=1e-37, Organism=Caenorhabditis elegans, GI115533418, Length=499, Percent_Identity=28.0561122244489, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17559078, Length=281, Percent_Identity=28.8256227758007, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24666175, Length=383, Percent_Identity=29.7650130548303, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI281366397, Length=410, Percent_Identity=30.4878048780488, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI281366395, Length=410, Percent_Identity=30.4878048780488, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI24666163, Length=410, Percent_Identity=30.4878048780488, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI281363223, Length=431, Percent_Identity=29.9303944315545, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI24666109, Length=442, Percent_Identity=30.7692307692308, Blast_Score=146, Evalue=4e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: =3.1.6.1 [H]
Molecular weight: Translated: 59299; Mature: 59167
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS00523 SULFATASE_1 ; PS00149 SULFATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANKWVALGAMTLAAVGGYWAYDANKYRIPGIVQDWREPVQPNRAIAWQQGPAAAPEGAR CCCCEEEHHHHHHHHHCCEEEECCCCEECCCHHHHHHHCCCCCCEEEECCCCCCCCCCCC PPNIILIVADDLGYNDISLNGGGVAGIVKTPNIDALAREGVHFTTAYAANATCSPSRAAM CCCEEEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHCCCEEEEEEECCCCCCCCHHEE MTGRYPTRFGFEFTAVPIEFAENLAHGEGVGPHRAIFHDELVTPDIPPYPQMGVPASEVT EECCCCCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHH IAEAVKAAGYHTVHIGKWHLGEAPELQPHAQGFDESLAVLAGAAMLLPEDDPDAVNAKLP HHHHHHHCCEEEEEEEEEECCCCCCCCHHHCCHHHHHHHHHCEEEECCCCCCCCEECCCC WDPIDRFIWANLRHAVTFNGSKRFAAQGHMTDYFADEAIKAIEANRNRPFFLYLAFTAPH CCHHHHHHHHCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC TPLQATRADYDRLAAIKDHRTRVYGAMIAQMDRRIGDVMAKLKEAGIDDNTLVIFTSDNG CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC GAWYNGMPGLNAPFRGWKATFFEGGIRAPLFMRWPARIAPGTERGDVTGHLDLFATIAAA CEEECCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH AGAALPADRTIDSEDILAGPAKRPAMFWRSGDYRAVRAGDWKLQVTKRPEKARLYNLAAD HCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCEEEEEECCEEEEEECCCCHHEEEEECCC PTERTDLSAREPARVAELGAMIEAQNRGMATPIWPGLVEGPVRIDVPLNTPWQDGQDYIY CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE WTN ECC >Mature Secondary Structure ANKWVALGAMTLAAVGGYWAYDANKYRIPGIVQDWREPVQPNRAIAWQQGPAAAPEGAR CCCEEEHHHHHHHHHCCEEEECCCCEECCCHHHHHHHCCCCCCEEEECCCCCCCCCCCC PPNIILIVADDLGYNDISLNGGGVAGIVKTPNIDALAREGVHFTTAYAANATCSPSRAAM CCCEEEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHCCCEEEEEEECCCCCCCCHHEE MTGRYPTRFGFEFTAVPIEFAENLAHGEGVGPHRAIFHDELVTPDIPPYPQMGVPASEVT EECCCCCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHH IAEAVKAAGYHTVHIGKWHLGEAPELQPHAQGFDESLAVLAGAAMLLPEDDPDAVNAKLP HHHHHHHCCEEEEEEEEEECCCCCCCCHHHCCHHHHHHHHHCEEEECCCCCCCCEECCCC WDPIDRFIWANLRHAVTFNGSKRFAAQGHMTDYFADEAIKAIEANRNRPFFLYLAFTAPH CCHHHHHHHHCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC TPLQATRADYDRLAAIKDHRTRVYGAMIAQMDRRIGDVMAKLKEAGIDDNTLVIFTSDNG CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC GAWYNGMPGLNAPFRGWKATFFEGGIRAPLFMRWPARIAPGTERGDVTGHLDLFATIAAA CEEECCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH AGAALPADRTIDSEDILAGPAKRPAMFWRSGDYRAVRAGDWKLQVTKRPEKARLYNLAAD HCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCEEEEEECCEEEEEECCCCHHEEEEECCC PTERTDLSAREPARVAELGAMIEAQNRGMATPIWPGLVEGPVRIDVPLNTPWQDGQDYIY CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE WTN ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7744061; 10984043 [H]