Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is atsA [H]
Identifier: 103485794
GI number: 103485794
Start: 297402
End: 299231
Strand: Direct
Name: atsA [H]
Synonym: Sala_0299
Alternate gene names: 103485794
Gene position: 297402-299231 (Clockwise)
Preceding gene: 103485793
Following gene: 103485797
Centisome position: 8.89
GC content: 67.49
Gene sequence:
>1830_bases ATGGCAGCAGGCTGGAGGACCACCAGGCGGGGCCGGACAGGTGCGTCCCGGCGTGCTGCCATCATCGCGCTCGCATGCCT GTTGGGAAGCACATCGGGCCTGGCGCAGTCACGCGCGGCGCCGCCGCGCCAGCCCAATATCGTCATCCTGCTCGCCGACG ACTGGGGGTTTTCGGACGTCGGTGCCTTTGGCTCCGAAATCGCGACACCGCATATCGACGCGCTCGCACGCGCCGGAATG CGCTTTGCGAACTTCCATGTCTCGGGTTCCTGCTCGCCGACGCGCGCGATGCTCCAGACGGGGGTGATGAACCACCGCAA CGGCCTCGGCAACATGCCCGAGACGATCCCCGACGAACATCGCGGCAAGCCCGGTTACGACACGGTGATGAACCTGCGCG TCGTGACGATCGCAGAGTTGATGAAGGCCGCGGGATACCGCACCTACCTGACCGGCAAATGGCATCTGGGCAGCGACGCA AAGCGGCTGCCCGAAGCGCGCGGATACGACCGCGCCTTCAGTCTCGCCGATGCGGGCGCCGACAATTTCGAGCAGCGACC GATCGAAGGGCTGTACGACAAGGCGAACTGGACCGAGAACGGCCGCCCCGCGACCCTGCCCCGCGATTATTATTCATCCA CCTTCGTCGTCGAAAAGATGATCGAATATATCGAGGCGGATCGCGATAGCGGCAAACCCTTCCTCGCCTCGATCAACTTC CTCGCCAATCATATCCCGGTGCAGGCGCCCGACAGCGACATCGCGCGCTATGCGGCGATGTATCAGGACGGCTGGACGGC GCTGCGCGAGGCACGCGCGCGGCGTGCGGCGGCACTCGGCATCGTGCCGGCGGGCACGCCGATGGTGACGATGCCGACGA CGCGCGACTGGCAGAGGCTGGACGCCGACGAACGCGCGGCGGCGGTGCGCGTGATGCAGGCCTATGGCGGCATGGCGACC GCGATGGACCGCGAGATCGGGCGACTCGTCGCGCACCTCAAGACCACGGGCGATTACGACAACACGATCTTCGTCTTCCT GTCCGACAATGGCGCCGAGCCGACGAATCCCTTTGCCAGTCTGCGCAACCGGCTGTTCCTGCGGATGCAATATGATCTTT CGACCGATAACATCGGGCGGCGGGGCAGTTTTTCGGCGATCGGGCCGGGCTGGGCAAGCGCCGCGGCGTCGCCCTTGTCA GGTTACAAGTTCAGCGCCGCCGAGGGCGGGCTGCGCGTCCCGCTGATCATCGCCTGGCCGGGGCATGGCGCGATCCCGGC GGGCGCGATCAACGACGGGCTGGCGCATGTCACCGACCTCTTGCCGACGCTTGCCGAACTGGCGGACGTGCCGCTGCACG AAGGGACATGGCAGGGGCGGAGCGTCGAGCCGATCACGGGGCGCAGCCTCGTCCCGATGCTGAAGGGTGCTGCGGGCAGC GTCCATGGCGACGCGCCGCTCGGTTACGAGCTGTCGGGCAATGCCGCGCTGTTTCGCGGCGATTACAAGCTGGTGCGCAA CCTGCCGCCGACCGGCGACGGCCGGTGGCGGCTCTATGACATCAAGACGGACCCCGGCGAGACCCGCGACCTGTCGGCGG CGATGCCCGATCGGTTCGCCGCGATGCTGTCCGACTACCGCGCCTATGCCAGGGCGAACGGCGTGCTCGACATGCCGGCG GGTTATACCGCCGACGAACAGATCAACCGTTATGCGTGGGAGCAGCAGGGGCGCAAACGCGCGATCAAGGCCGGGCTGTG GCTGGGCGGCGGGTTGATGGCGCTGGCGTTGCTGGTCTGGAGCTGGCGGCGGCGGCGCGCGCGGGGGTAA
Upstream 100 bases:
>100_bases GCGCGCCCGAATATCGCGAGCGATAGGATCGCCGCGCACGCCCCATTGACTTGCCATTATATTGGCATAGTAAATGCCAT ATCCCTTGGGGGTGGGAGTG
Downstream 100 bases:
>100_bases TGTGGGCGCGGATGTGGGGTGCCTTGGGCGGTAGGCTGGATGGTTGAGGTTGTTGTCGGCTTTGGGGTGGAGAGCTGCCA TAAACCCCTCTCCCCTTCAG
Product: sulfatase
Products: NA
Alternate protein names: AS; Aryl-sulfate sulphohydrolase [H]
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MAAGWRTTRRGRTGASRRAAIIALACLLGSTSGLAQSRAAPPRQPNIVILLADDWGFSDVGAFGSEIATPHIDALARAGM RFANFHVSGSCSPTRAMLQTGVMNHRNGLGNMPETIPDEHRGKPGYDTVMNLRVVTIAELMKAAGYRTYLTGKWHLGSDA KRLPEARGYDRAFSLADAGADNFEQRPIEGLYDKANWTENGRPATLPRDYYSSTFVVEKMIEYIEADRDSGKPFLASINF LANHIPVQAPDSDIARYAAMYQDGWTALREARARRAAALGIVPAGTPMVTMPTTRDWQRLDADERAAAVRVMQAYGGMAT AMDREIGRLVAHLKTTGDYDNTIFVFLSDNGAEPTNPFASLRNRLFLRMQYDLSTDNIGRRGSFSAIGPGWASAAASPLS GYKFSAAEGGLRVPLIIAWPGHGAIPAGAINDGLAHVTDLLPTLAELADVPLHEGTWQGRSVEPITGRSLVPMLKGAAGS VHGDAPLGYELSGNAALFRGDYKLVRNLPPTGDGRWRLYDIKTDPGETRDLSAAMPDRFAAMLSDYRAYARANGVLDMPA GYTADEQINRYAWEQQGRKRAIKAGLWLGGGLMALALLVWSWRRRRARG
Sequences:
>Translated_609_residues MAAGWRTTRRGRTGASRRAAIIALACLLGSTSGLAQSRAAPPRQPNIVILLADDWGFSDVGAFGSEIATPHIDALARAGM RFANFHVSGSCSPTRAMLQTGVMNHRNGLGNMPETIPDEHRGKPGYDTVMNLRVVTIAELMKAAGYRTYLTGKWHLGSDA KRLPEARGYDRAFSLADAGADNFEQRPIEGLYDKANWTENGRPATLPRDYYSSTFVVEKMIEYIEADRDSGKPFLASINF LANHIPVQAPDSDIARYAAMYQDGWTALREARARRAAALGIVPAGTPMVTMPTTRDWQRLDADERAAAVRVMQAYGGMAT AMDREIGRLVAHLKTTGDYDNTIFVFLSDNGAEPTNPFASLRNRLFLRMQYDLSTDNIGRRGSFSAIGPGWASAAASPLS GYKFSAAEGGLRVPLIIAWPGHGAIPAGAINDGLAHVTDLLPTLAELADVPLHEGTWQGRSVEPITGRSLVPMLKGAAGS VHGDAPLGYELSGNAALFRGDYKLVRNLPPTGDGRWRLYDIKTDPGETRDLSAAMPDRFAAMLSDYRAYARANGVLDMPA GYTADEQINRYAWEQQGRKRAIKAGLWLGGGLMALALLVWSWRRRRARG >Mature_608_residues AAGWRTTRRGRTGASRRAAIIALACLLGSTSGLAQSRAAPPRQPNIVILLADDWGFSDVGAFGSEIATPHIDALARAGMR FANFHVSGSCSPTRAMLQTGVMNHRNGLGNMPETIPDEHRGKPGYDTVMNLRVVTIAELMKAAGYRTYLTGKWHLGSDAK RLPEARGYDRAFSLADAGADNFEQRPIEGLYDKANWTENGRPATLPRDYYSSTFVVEKMIEYIEADRDSGKPFLASINFL ANHIPVQAPDSDIARYAAMYQDGWTALREARARRAAALGIVPAGTPMVTMPTTRDWQRLDADERAAAVRVMQAYGGMATA MDREIGRLVAHLKTTGDYDNTIFVFLSDNGAEPTNPFASLRNRLFLRMQYDLSTDNIGRRGSFSAIGPGWASAAASPLSG YKFSAAEGGLRVPLIIAWPGHGAIPAGAINDGLAHVTDLLPTLAELADVPLHEGTWQGRSVEPITGRSLVPMLKGAAGSV HGDAPLGYELSGNAALFRGDYKLVRNLPPTGDGRWRLYDIKTDPGETRDLSAAMPDRFAAMLSDYRAYARANGVLDMPAG YTADEQINRYAWEQQGRKRAIKAGLWLGGGLMALALLVWSWRRRRARG
Specific function: Unknown
COG id: COG3119
COG function: function code P; Arylsulfatase A and related enzymes
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfatase family [H]
Homologues:
Organism=Homo sapiens, GI38569405, Length=573, Percent_Identity=26.7015706806283, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI38569407, Length=421, Percent_Identity=28.5035629453682, Blast_Score=136, Evalue=7e-32, Organism=Homo sapiens, GI109389362, Length=422, Percent_Identity=27.4881516587678, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI59797060, Length=575, Percent_Identity=24.3478260869565, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI146229331, Length=439, Percent_Identity=29.1571753986333, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI146229329, Length=439, Percent_Identity=29.1571753986333, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI6005990, Length=439, Percent_Identity=29.1571753986333, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI146229324, Length=439, Percent_Identity=29.1571753986333, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI45430057, Length=480, Percent_Identity=28.5416666666667, Blast_Score=113, Evalue=6e-25, Organism=Homo sapiens, GI4506919, Length=569, Percent_Identity=25.1318101933216, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI31742482, Length=488, Percent_Identity=25.6147540983607, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI157266309, Length=628, Percent_Identity=24.203821656051, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI53831991, Length=470, Percent_Identity=25.3191489361702, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI4503899, Length=244, Percent_Identity=29.0983606557377, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI58743319, Length=577, Percent_Identity=22.7036395147314, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI71852586, Length=176, Percent_Identity=30.6818181818182, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI1790233, Length=142, Percent_Identity=34.5070422535211, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1790112, Length=516, Percent_Identity=21.8992248062016, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533416, Length=541, Percent_Identity=24.9537892791128, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI115533418, Length=533, Percent_Identity=24.953095684803, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559078, Length=138, Percent_Identity=36.9565217391304, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI24666109, Length=454, Percent_Identity=27.0925110132159, Blast_Score=126, Evalue=5e-29, Organism=Drosophila melanogaster, GI24666175, Length=449, Percent_Identity=27.6169265033408, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI281366397, Length=436, Percent_Identity=26.605504587156, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI281366395, Length=436, Percent_Identity=26.605504587156, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI24666163, Length=436, Percent_Identity=26.605504587156, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI281363223, Length=523, Percent_Identity=23.9005736137667, Blast_Score=105, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: =3.1.6.1 [H]
Molecular weight: Translated: 66212; Mature: 66081
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGWRTTRRGRTGASRRAAIIALACLLGSTSGLAQSRAAPPRQPNIVILLADDWGFSDV CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCHHH GAFGSEIATPHIDALARAGMRFANFHVSGSCSPTRAMLQTGVMNHRNGLGNMPETIPDEH HHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH RGKPGYDTVMNLRVVTIAELMKAAGYRTYLTGKWHLGSDAKRLPEARGYDRAFSLADAGA CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHCCCCCCCCHHHHHHHCCC DNFEQRPIEGLYDKANWTENGRPATLPRDYYSSTFVVEKMIEYIEADRDSGKPFLASINF CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LANHIPVQAPDSDIARYAAMYQDGWTALREARARRAAALGIVPAGTPMVTMPTTRDWQRL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCCCCCHHHC DADERAAAVRVMQAYGGMATAMDREIGRLVAHLKTTGDYDNTIFVFLSDNGAEPTNPFAS CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHH LRNRLFLRMQYDLSTDNIGRRGSFSAIGPGWASAAASPLSGYKFSAAEGGLRVPLIIAWP HHHHEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCEEEEEEEEC GHGAIPAGAINDGLAHVTDLLPTLAELADVPLHEGTWQGRSVEPITGRSLVPMLKGAAGS CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC VHGDAPLGYELSGNAALFRGDYKLVRNLPPTGDGRWRLYDIKTDPGETRDLSAAMPDRFA CCCCCCCCEEECCCEEEEECCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHCHHHHH AMLSDYRAYARANGVLDMPAGYTADEQINRYAWEQQGRKRAIKAGLWLGGGLMALALLVW HHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHH SWRRRRARG HHHHHHCCC >Mature Secondary Structure AAGWRTTRRGRTGASRRAAIIALACLLGSTSGLAQSRAAPPRQPNIVILLADDWGFSDV CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCHHH GAFGSEIATPHIDALARAGMRFANFHVSGSCSPTRAMLQTGVMNHRNGLGNMPETIPDEH HHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH RGKPGYDTVMNLRVVTIAELMKAAGYRTYLTGKWHLGSDAKRLPEARGYDRAFSLADAGA CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHCCCCCCCCHHHHHHHCCC DNFEQRPIEGLYDKANWTENGRPATLPRDYYSSTFVVEKMIEYIEADRDSGKPFLASINF CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LANHIPVQAPDSDIARYAAMYQDGWTALREARARRAAALGIVPAGTPMVTMPTTRDWQRL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCCCCCHHHC DADERAAAVRVMQAYGGMATAMDREIGRLVAHLKTTGDYDNTIFVFLSDNGAEPTNPFAS CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHH LRNRLFLRMQYDLSTDNIGRRGSFSAIGPGWASAAASPLSGYKFSAAEGGLRVPLIIAWP HHHHEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCEEEEEEEEC GHGAIPAGAINDGLAHVTDLLPTLAELADVPLHEGTWQGRSVEPITGRSLVPMLKGAAGS CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC VHGDAPLGYELSGNAALFRGDYKLVRNLPPTGDGRWRLYDIKTDPGETRDLSAAMPDRFA CCCCCCCCEEECCCEEEEECCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHCHHHHH AMLSDYRAYARANGVLDMPAGYTADEQINRYAWEQQGRKRAIKAGLWLGGGLMALALLVW HHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHH SWRRRRARG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7744061; 10984043 [H]