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The map label for this gene is rbsC [H]

Identifier: 99081030

GI number: 99081030

Start: 1279188

End: 1280183

Strand: Direct

Name: rbsC [H]

Synonym: TM1040_1189

Alternate gene names: 99081030

Gene position: 1279188-1280183 (Clockwise)

Preceding gene: 99081029

Following gene: 99081031

Centisome position: 39.96

GC content: 59.44

Gene sequence:

>996_bases
ATGGAGCAATCTGTGAACATCGCACTGGCCGAAACATCGAGGGGAAAATCGCTTTTGGGGCGGCTCTTGCGGATGCGCGA
AACGGGCCTCATTCTGATTATCCTGGCGCTTTTCATCGGCATGTCCTTTGCCTCGCCCTATTTTCTGACATGGGTCAATA
TTCGCGCCATGACCATGGCCTTTGCCGTCGAAGGCATCGTGGTTGTGGGCATGACGGTTTTGCTGATTTCTGGCGGCATC
GACCTTTCGGTGGGGTCGGTCACGGCTCTGTCGGGGGTGATCGCGGGCTGGCTGTTCCTGCAGGGGATTGACCCCTGGGT
GGCCGCAGCGATTGCGATTTTTGCCTGTACCGCCATCGGGTCGTTCATGGGGTTCTTTACCACGCGGATCGGGCTGCACC
ATTTTATCGTGTCGCTTGCCGTCATGGTGATTGCACGCGGGATCTGTCTTTTGGCGACGGGCGGGCGGCCCATCGGGCTC
TATACGCTGCCGCCAGAGTTCAAATTCATCGGGCAGGGCACCATTGGTCCCATTCCGGTTGTGATCATCCTCTTTGTTGT
GGTGGTGATCGCCGCGGATTTCATGCTGCGCCGCACCACCATGTTCCGCAAGGTGTTCTACACCGGCTCCAACGAGAAGG
CCGCCGCCTATTCCGGCATCCGCACCAAGAAGGTGGTGTTTTTGACCACGACGCTTTGCTCTGCGCTTTGTGGGTTCGCC
GGGATCATCTACATGGCGCGCTTCGGGTCTGCGCAGCCGACCTTTGGACTCGGGATGGAACTGAACGTCATCGCCGCTGC
GGTGATCGGCGGTGCGAGCCTCAACGGCGGCTCGGGATCCATCTTTGGCGCGATCCTTGGGACGGTGCTGTTGTCGGTGG
TGTCGTCTTCGCTCGCGCTCTTGGATGTGTCGGTCTACTGGCAGGACATCATCCGGGGGTCGATCCTTCTGGCGGCGGTG
ACAATCGACCACTTCCTCAACAAGAAGCGGGGCTGA

Upstream 100 bases:

>100_bases
GTGGCCCGGACATGACAGAAGAAAACATCATGCACCTTGCCTCGGGCACTCAGCAAGGCACGGGTGCAGCGTCGGTTGCG
GCGCAATGAAGGGGGAGACA

Downstream 100 bases:

>100_bases
GGGGGATATGGTTGAGCACAGACAAGGGTTCGAAACCGTCCGCCAGATCCACACTGTTTTGGTCCTTCATTTTATCGAGG
GCAAGAAACAGTCGGAGATC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMAFAVEGIVVVGMTVLLISGGI
DLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIGSFMGFFTTRIGLHHFIVSLAVMVIARGICLLATGGRPIGL
YTLPPEFKFIGQGTIGPIPVVIILFVVVVIAADFMLRRTTMFRKVFYTGSNEKAAAYSGIRTKKVVFLTTTLCSALCGFA
GIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGSIFGAILGTVLLSVVSSSLALLDVSVYWQDIIRGSILLAAV
TIDHFLNKKRG

Sequences:

>Translated_331_residues
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMAFAVEGIVVVGMTVLLISGGI
DLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIGSFMGFFTTRIGLHHFIVSLAVMVIARGICLLATGGRPIGL
YTLPPEFKFIGQGTIGPIPVVIILFVVVVIAADFMLRRTTMFRKVFYTGSNEKAAAYSGIRTKKVVFLTTTLCSALCGFA
GIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGSIFGAILGTVLLSVVSSSLALLDVSVYWQDIIRGSILLAAV
TIDHFLNKKRG
>Mature_331_residues
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMAFAVEGIVVVGMTVLLISGGI
DLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIGSFMGFFTTRIGLHHFIVSLAVMVIARGICLLATGGRPIGL
YTLPPEFKFIGQGTIGPIPVVIILFVVVVIAADFMLRRTTMFRKVFYTGSNEKAAAYSGIRTKKVVFLTTTLCSALCGFA
GIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGSIFGAILGTVLLSVVSSSLALLDVSVYWQDIIRGSILLAAV
TIDHFLNKKRG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=35.7142857142857, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=34.4370860927152, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=33.5504885993485, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=30.0653594771242, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=31.1418685121107, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789992, Length=350, Percent_Identity=29.4285714285714, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082395, Length=262, Percent_Identity=31.2977099236641, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=28.6919831223629, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=29.0030211480363, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787794, Length=272, Percent_Identity=28.3088235294118, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34973; Mature: 34973

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMA
CCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FAVEGIVVVGMTVLLISGGIDLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIG
HHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SFMGFFTTRIGLHHFIVSLAVMVIARGICLLATGGRPIGLYTLPPEFKFIGQGTIGPIPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEECCCCCCHHHH
VIILFVVVVIAADFMLRRTTMFRKVFYTGSNEKAAAYSGIRTKKVVFLTTTLCSALCGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHH
GIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGSIFGAILGTVLLSVVSSSLAL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDVSVYWQDIIRGSILLAAVTIDHFLNKKRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQSVNIALAETSRGKSLLGRLLRMRETGLILIILALFIGMSFASPYFLTWVNIRAMTMA
CCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FAVEGIVVVGMTVLLISGGIDLSVGSVTALSGVIAGWLFLQGIDPWVAAAIAIFACTAIG
HHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SFMGFFTTRIGLHHFIVSLAVMVIARGICLLATGGRPIGLYTLPPEFKFIGQGTIGPIPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEECCCCCCHHHH
VIILFVVVVIAADFMLRRTTMFRKVFYTGSNEKAAAYSGIRTKKVVFLTTTLCSALCGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHH
GIIYMARFGSAQPTFGLGMELNVIAAAVIGGASLNGGSGSIFGAILGTVLLSVVSSSLAL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDVSVYWQDIIRGSILLAAVTIDHFLNKKRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]