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The map label for this gene is cspC [C]

Identifier: 99080990

GI number: 99080990

Start: 1236516

End: 1237055

Strand: Direct

Name: cspC [C]

Synonym: TM1040_1149

Alternate gene names: 99080990

Gene position: 1236516-1237055 (Clockwise)

Preceding gene: 99080989

Following gene: 99080991

Centisome position: 38.63

GC content: 59.63

Gene sequence:

>540_bases
GTGGCCGATGATCTGAGCAGTTTGCAGCATGTCCGTGGACTAGTGAAGTGGTTTGACCCCGCTAAGGGGTATGGATTCAT
TGTCTGTCCTGACGATGGTCCCGATATTCTCTTGCACGTGAACGTCCTGCGTAACTTCGGGCAAAGCTCTGTCGCGGATG
GCGCCGGGATCGAGGTTGTGACCCATCGCACGGATCGCGGTGTGCAGGCGGTTGAAATCGTATCCATTACCCCACCGGAG
CGCGAGGACACCCCCGTCCTGAGTGATCTGGCACAGCTGGATGACGAGGAGCTCAGCAACACACCGCTGGAGCCTGCGCG
CGTGAAATGGTTCGACAAAGCCAAAGGGTTTGGCTTTGCCAATGTGTTTGGCCGCGACGAAGACGTGTTCCTGCATGTCG
AAGTGCTGCGCCAGTCGGGGCTCTCTGACGTGCAGTCCGGCGAGGCACTGGCGATGCGCGTGATCGACGGCAAACGTGGC
CGGATGGCTGTGGATGTGCTTGCCTGGGAGGCAGCCTCTTCAGACACCAGCAGCGTCTGA

Upstream 100 bases:

>100_bases
CTCTGTGGCTCCTGACTCTTTTGCTCTTGAACTCCGATATGGATTTCGCGCAGGTAGGCGGGCATCACGGAAATAAAAAA
CGAACCGGTGGAATACTAAA

Downstream 100 bases:

>100_bases
TGATTCGTCGGGCGGCCTCGCATATCGCAGCCGTCGCCCTCTGGGTCGTCACGACCTCTGGTCTGGCTACCGCGGCCTGT
TCGCGGGACCATGTAGATCT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE; Cold Shock Protein CspA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRGVQAVEIVSITPPE
REDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFANVFGRDEDVFLHVEVLRQSGLSDVQSGEALAMRVIDGKRG
RMAVDVLAWEAASSDTSSV

Sequences:

>Translated_179_residues
MADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRGVQAVEIVSITPPE
REDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFANVFGRDEDVFLHVEVLRQSGLSDVQSGEALAMRVIDGKRG
RMAVDVLAWEAASSDTSSV
>Mature_178_residues
ADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRGVQAVEIVSITPPER
EDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFANVFGRDEDVFLHVEVLRQSGLSDVQSGEALAMRVIDGKRGR
MAVDVLAWEAASSDTSSV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19477; Mature: 19346

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVV
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEHHHHCCCCCCCCCCCCEEEE
THRTDRGVQAVEIVSITPPEREDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFA
EECCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHEEEEHHCCCCCCH
NVFGRDEDVFLHVEVLRQSGLSDVQSGEALAMRVIDGKRGRMAVDVLAWEAASSDTSSV
HHCCCCCCEEEEHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
ADDLSSLQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGIEVV
CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEHHHHCCCCCCCCCCCCEEEE
THRTDRGVQAVEIVSITPPEREDTPVLSDLAQLDDEELSNTPLEPARVKWFDKAKGFGFA
EECCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHEEEEHHCCCCCCH
NVFGRDEDVFLHVEVLRQSGLSDVQSGEALAMRVIDGKRGRMAVDVLAWEAASSDTSSV
HHCCCCCCEEEEHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA