Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080991

Identifier: 99080991

GI number: 99080991

Start: 1237055

End: 1237534

Strand: Direct

Name: 99080991

Synonym: TM1040_1150

Alternate gene names: NA

Gene position: 1237055-1237534 (Clockwise)

Preceding gene: 99080990

Following gene: 99080992

Centisome position: 38.65

GC content: 60.21

Gene sequence:

>480_bases
ATGATTCGTCGGGCGGCCTCGCATATCGCAGCCGTCGCCCTCTGGGTCGTCACGACCTCTGGTCTGGCTACCGCGGCCTG
TTCGCGGGACCATGTAGATCTGCGCGGCCCGTGGGGGCAGGCGCGGTTCTCGGTCGAAGTGGTCGACACGCCCGAAACCC
GCGCTCAGGGTCTGATGCACCGCAAGAGCCTTCCTGCGCGCTCTGGCATGCTCTTCATATACGAAGAGCCGCAGCGCGTG
GCTTTCTGGATGAAAAACACTTTGATCCCGCTCGACATGATCTTTGTCGAGGCGGACGGCGTCGTATCGCACATCCATAA
AAACGCTCTGCCCGGGGATCTTACGCCGATTCCGGGGGGCGATCAGGTGTTGGTCGTGCTCGAGGTCAACGCTGGCATCG
TCGAGACCTACGGGATTTCAGTTGGCACTGAGATGCGGCACGAAGTTTTTTCATCTGAAGCTGCAAAATGGCCCTGTTAG

Upstream 100 bases:

>100_bases
GCGAGGCACTGGCGATGCGCGTGATCGACGGCAAACGTGGCCGGATGGCTGTGGATGTGCTTGCCTGGGAGGCAGCCTCT
TCAGACACCAGCAGCGTCTG

Downstream 100 bases:

>100_bases
GGCTTTTCAAATCAGAACAGCCCCGTTAGGAAGACGCACGGTCCGGGGCGTGGCGCAGTCTGGTAGCGCACCTGTTTTGG
GTACAGGGGGTCGTGAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMHRKSLPARSGMLFIYEEPQRV
AFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGGDQVLVVLEVNAGIVETYGISVGTEMRHEVFSSEAAKWPC

Sequences:

>Translated_159_residues
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMHRKSLPARSGMLFIYEEPQRV
AFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGGDQVLVVLEVNAGIVETYGISVGTEMRHEVFSSEAAKWPC
>Mature_159_residues
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMHRKSLPARSGMLFIYEEPQRV
AFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGGDQVLVVLEVNAGIVETYGISVGTEMRHEVFSSEAAKWPC

Specific function: Unknown

COG id: COG1430

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17376; Mature: 17376

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMH
CCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEECCCCCCEEEEEEEECCCHHHHHHHH
RKSLPARSGMLFIYEEPQRVAFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGG
HHCCCCCCCEEEEEECCCCEEEEHHCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
DQVLVVLEVNAGIVETYGISVGTEMRHEVFSSEAAKWPC
CEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRRAASHIAAVALWVVTTSGLATAACSRDHVDLRGPWGQARFSVEVVDTPETRAQGLMH
CCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEECCCCCCEEEEEEEECCCHHHHHHHH
RKSLPARSGMLFIYEEPQRVAFWMKNTLIPLDMIFVEADGVVSHIHKNALPGDLTPIPGG
HHCCCCCCCEEEEEECCCCEEEEHHCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCC
DQVLVVLEVNAGIVETYGISVGTEMRHEVFSSEAAKWPC
CEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA