| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080910
Identifier: 99080910
GI number: 99080910
Start: 1144114
End: 1144746
Strand: Direct
Name: 99080910
Synonym: TM1040_1069
Alternate gene names: NA
Gene position: 1144114-1144746 (Clockwise)
Preceding gene: 99080909
Following gene: 99080911
Centisome position: 35.74
GC content: 62.72
Gene sequence:
>633_bases ATGAGTTTTCACGAAGTTCGTTTTCCCGAAACGCTCTCTTTTGGCTCTGTTGGCGGGCCGGAGCGGCGCACGGATGTGGT GACGCTGGCCAATGGCCACGAGGAACGCAACACCCCCTGGGCGCACGCGCGGCGGCGTTATGATGCGGGCCTGGGCCTGC GCAGCCTTGAGGATATTGCCGCGCTCATCGCGTTTTTCGAGGCCCGTCAGGGCCAGCTCCATGGGTTTCGCTGGAAGGAT TGGACCGACTATGCGTCATCGCTGCCGGGGCAGGAGGTGACGTTTGAGGATCAGCTGATCGCGACCGGCGATGGCGACAG GCGTGTGTTCCAGCTTGCCAAACGCTACCGCTCCGGCCCGCATGAGTATCTGCGCCCGATCAGCAAACCCGTGGCGGGCA CCGTGCGCCTTGGGATCGACAATGAGGCGCTGGTCGAGGGCGTGGATTATGGCCTCGACCTCACGACAGGGTTGGTGACG CTGGCCTATGTGCCTGAAATTGGTCGTGAAATCCGTGCTGGCTTTGAGTTTGACGTGCCAGTGCGCTTTGACACGGATCG CATCCAGACCTCGGTGGCGTCGTTTCAGGCGGGCGAGGCCCCGAATGTGCCAGTGGTGGAGGTGCGGGTGTGA
Upstream 100 bases:
>100_bases CCCGACGTGGCCGGGTTCCAGCGCTCCCGTGGGCAGATCGCAGCCCAGATGAGCCGCATGCTCGCACGCGGAAACCGCAA TCGCTAAGGAGGCTAAGCCT
Downstream 100 bases:
>100_bases TGGATCGCGAAGGCTTGAACACGCATCTCAAATCCGGGGCCACCACGGTGTGCCGCGCCTGGGAAGTCCGTCGCACGGAT GGCGTGACGCTGGGGTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MSFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIAALIAFFEARQGQLHGFRWKD WTDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGPHEYLRPISKPVAGTVRLGIDNEALVEGVDYGLDLTTGLVT LAYVPEIGREIRAGFEFDVPVRFDTDRIQTSVASFQAGEAPNVPVVEVRV
Sequences:
>Translated_210_residues MSFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIAALIAFFEARQGQLHGFRWKD WTDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGPHEYLRPISKPVAGTVRLGIDNEALVEGVDYGLDLTTGLVT LAYVPEIGREIRAGFEFDVPVRFDTDRIQTSVASFQAGEAPNVPVVEVRV >Mature_209_residues SFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIAALIAFFEARQGQLHGFRWKDW TDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGPHEYLRPISKPVAGTVRLGIDNEALVEGVDYGLDLTTGLVTL AYVPEIGREIRAGFEFDVPVRFDTDRIQTSVASFQAGEAPNVPVVEVRV
Specific function: Unknown
COG id: COG5448
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23448; Mature: 23317
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIA CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHH ALIAFFEARQGQLHGFRWKDWTDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGP HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEECCEEEEECCCHHHHHHHHHHHCCCC HEYLRPISKPVAGTVRLGIDNEALVEGVDYGLDLTTGLVTLAYVPEIGREIRAGFEFDVP HHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC VRFDTDRIQTSVASFQAGEAPNVPVVEVRV EEECHHHHHHHHHHHCCCCCCCCCEEEEEC >Mature Secondary Structure SFHEVRFPETLSFGSVGGPERRTDVVTLANGHEERNTPWAHARRRYDAGLGLRSLEDIA CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHH ALIAFFEARQGQLHGFRWKDWTDYASSLPGQEVTFEDQLIATGDGDRRVFQLAKRYRSGP HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEECCEEEEECCCHHHHHHHHHHHCCCC HEYLRPISKPVAGTVRLGIDNEALVEGVDYGLDLTTGLVTLAYVPEIGREIRAGFEFDVP HHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC VRFDTDRIQTSVASFQAGEAPNVPVVEVRV EEECHHHHHHHHHHHCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA