Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080911

Identifier: 99080911

GI number: 99080911

Start: 1144746

End: 1145624

Strand: Direct

Name: 99080911

Synonym: TM1040_1070

Alternate gene names: NA

Gene position: 1144746-1145624 (Clockwise)

Preceding gene: 99080910

Following gene: 99080912

Centisome position: 35.76

GC content: 64.96

Gene sequence:

>879_bases
ATGGATCGCGAAGGCTTGAACACGCATCTCAAATCCGGGGCCACCACGGTGTGCCGCGCCTGGGAAGTCCGTCGCACGGA
TGGCGTGACGCTGGGGTTCACCGATCATGACCGGGACCTGAGCTTTGACGGGATGACCTTTCGCGCCGGAACCGGCCTCA
GCGCGCGCAGCCTGATGCAGAGCACCGGGCTTGCGGTCGACAACAGCGAAGCGCTCGGCGCGCTCAGCTCCGATGCGGTG
CGCGAGGCGGATATTGAATCCGGGCGCTATGACGGCGCGGAGGTGCGCGCGTGGTTGGTGAACTGGGCGGACACAACTGA
GCGCGCCCTGCAGTTTCGCGGCTCCCTCGGCGAGATCCGCCGCGCAGGCGGCGCCTTTGAGGCCGAATTGCGTGGCCTCA
CCGAAGCGTTGAACCAGCCGCTTGGGCGGGTGTTCCAAAAGCCGTGCAGCGCGGTTCTGGGCGACGCGGCGTGCAAATTC
GACCTGAGTACGGCGGGCTATGCTGTTGAAATTGATGTTGAAACATTACGCGATGGGCAGTTGTTCGCGTGGGCGAGCCT
CGATGGATTTGCGCCGGGGTGGTTCACTGGCGGGCGGCTTACGGTTCTGGGTGGGGCGGGCGCAGGTCTCTGGGCCCCAA
TCCGGTCGGACAGTCTGAACGCGCGCCGCGAAATCACCCTCTGGCAGCCGATCCGCGCCGATATTCAGCCGGGCGACTTG
GTGCGTCTGAGCGCAGGCTGCGACAAACGGCAGAGCACCTGTCGGCTGAAGTTCGACAATCTGGTGAATTATCAGGGCTT
TCCCGACATTCCCGGCGAGGACTGGATGGTGGCAGTCCCCAAGCGCACCGGCCAGAACACCGGTGGCAGCCGCAGATGA

Upstream 100 bases:

>100_bases
ACGTGCCAGTGCGCTTTGACACGGATCGCATCCAGACCTCGGTGGCGTCGTTTCAGGCGGGCGAGGCCCCGAATGTGCCA
GTGGTGGAGGTGCGGGTGTG

Downstream 100 bases:

>100_bases
GCCGCGACATCAACACAGAGGCGGTGGCCCTCGCGCGGCTCTGGCTGGGCACGCCCTATCGCCATCAGGGGGCCACGCGG
GGGGCGGGCTGCGATTGTCT

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV
READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF
DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL
VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR

Sequences:

>Translated_292_residues
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV
READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF
DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL
VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR
>Mature_292_residues
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV
READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF
DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL
VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR

Specific function: Unknown

COG id: COG5449

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31620; Mature: 31620

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQ
CCCCCCCHHHHCCCHHHHHHEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH
STGLAVDNSEALGALSSDAVREADIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIR
HHCCEEECCHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCHHHHH
RAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKFDLSTAGYAVEIDVETLRDGQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEEEHHCCCCCC
LFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL
EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR
EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQ
CCCCCCCHHHHCCCHHHHHHEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH
STGLAVDNSEALGALSSDAVREADIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIR
HHCCEEECCHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCHHHHH
RAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKFDLSTAGYAVEIDVETLRDGQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEEEHHCCCCCC
LFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL
EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR
EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA