| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080903
Identifier: 99080903
GI number: 99080903
Start: 1141108
End: 1141710
Strand: Direct
Name: 99080903
Synonym: TM1040_1062
Alternate gene names: NA
Gene position: 1141108-1141710 (Clockwise)
Preceding gene: 99080902
Following gene: 99080904
Centisome position: 35.65
GC content: 68.33
Gene sequence:
>603_bases ATGATTTTGCACGAACTGACCCCGCTGCCGGACAGCGCCCTACCGCTCGCGGCCTTCAAGGCGCATCTGCGTCTGGGCAC GGGATTTGGCGAGGAAACGCTGCAGGACGCGGTGCTTCTGGCCTTCTTGCGCGCCAGCCTTGCGGCCATTGAGGCGCGGA TCAACAAGGCGCTGATGCAGCGCGACTATGTGTGGCGCCTCAATGCCTGGCCCCGCGTGGTGGAGCTGCCGGTGGCGCCG GTTTCGAGCGTCACGCAGGTGGCACTGGTGGACCAAACCGGCGCGGAGACCGAAGTGCCCGCGGCGGCCTATGCGCTGGC ACCCGACGCCCATGCGCCGCGCCTCACTCCGGTGGCGGGCCTCTGGCCGATGCTGCCCACGCAGGGCGGCGCGGTGATCC GTTTCACCGCCGGGATGGCGGCGACATGGGATGCGATCCCGGCGGATCTGGCGCAGGCGGTGATGCTGCTGGCGGCGCAT TACTACGAGTATCGCGATGACACCTCCTTGCATGCAGGCTGCATGCCCTTTGGGGTGGCGAGCCTCTTGGACCGCCACCG GATGCCGCGCCTGAGCCTGGCCCGGAGCGAGGTGCAATCATGA
Upstream 100 bases:
>100_bases GCTCCCCTCCGTCCGAGCGGCAGACCCGGCGCGCACCCGCCCCCTAAGGGAGGCACAGCAGACCCTGTGCGCGGAGCGAG ATTTCCAGCGGAGATTGCCG
Downstream 100 bases:
>100_bases GCGCGCCACGTCTGAACCGCCTGTTGCACCTCGAAGATCCACAAGCGACCGGTGACGGCGCCGGAGGGTTTGAGGTGACT TGGGTTGTGCTGGGCCAGCA
Product: phiE125 gp8 hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQRDYVWRLNAWPRVVELPVAP VSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAGLWPMLPTQGGAVIRFTAGMAATWDAIPADLAQAVMLLAAH YYEYRDDTSLHAGCMPFGVASLLDRHRMPRLSLARSEVQS
Sequences:
>Translated_200_residues MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQRDYVWRLNAWPRVVELPVAP VSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAGLWPMLPTQGGAVIRFTAGMAATWDAIPADLAQAVMLLAAH YYEYRDDTSLHAGCMPFGVASLLDRHRMPRLSLARSEVQS >Mature_200_residues MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQRDYVWRLNAWPRVVELPVAP VSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAGLWPMLPTQGGAVIRFTAGMAATWDAIPADLAQAVMLLAAH YYEYRDDTSLHAGCMPFGVASLLDRHRMPRLSLARSEVQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21587; Mature: 21587
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQ CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDYVWRLNAWPRVVELPVAPVSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAG HCCEEEECCCCCEEECCCCCHHHHHEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCHHH LWPMLPTQGGAVIRFTAGMAATWDAIPADLAQAVMLLAAHYYEYRDDTSLHAGCMPFGVA HCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH SLLDRHRMPRLSLARSEVQS HHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MILHELTPLPDSALPLAAFKAHLRLGTGFGEETLQDAVLLAFLRASLAAIEARINKALMQ CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDYVWRLNAWPRVVELPVAPVSSVTQVALVDQTGAETEVPAAAYALAPDAHAPRLTPVAG HCCEEEECCCCCEEECCCCCHHHHHEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCHHH LWPMLPTQGGAVIRFTAGMAATWDAIPADLAQAVMLLAAHYYEYRDDTSLHAGCMPFGVA HCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH SLLDRHRMPRLSLARSEVQS HHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA