| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bphB [H]
Identifier: 99080871
GI number: 99080871
Start: 1108141
End: 1110486
Strand: Direct
Name: bphB [H]
Synonym: TM1040_1030
Alternate gene names: 99080871
Gene position: 1108141-1110486 (Clockwise)
Preceding gene: 99080870
Following gene: 99080872
Centisome position: 34.62
GC content: 60.91
Gene sequence:
>2346_bases ATGCTCTTCTTGGGTCTGTTGACCTTTGCGTGTGCCTTGGCTCTCTTGATGGGCGCCTCTCTGGCGCAATCTCAGGAGAC CGTGCGGGTCCCATGGACCGAAGCTCCGCCGATGATGATGTCCGATGCAGAGGGTCAGCCAAGCGGATTTACAGTGGAGC TGGCGCAGATGCTCGCCCAAGAGGCGGGCTTTGACATTGAGTTTCGCCACTATGACCGTATCGATGAGGTCACAGCCGCG CAGGCGCGTGGCGAGACGGATATGCTCGCCGGTGTTGATTTGATTGACGTTTTTCAGCCCCAGAACCGGATTTCCGATCC CATCGCGCGGATCACGGTCTCCCTTGCGGTGCCAACGGAACGGGCCGAGCAGTTTGATCCAACCAATCTGGACGGCAAGC GCGTCGCGGTGATCCCACCGATCCTAGGCTCTGATCCGGACTTGTTGCCGGGGGCCACGCTGGTGAATCATACTAATCCC GAGGCGGCGTTGGTTTCGGTATTGTCGGGGCAGGCGGATGCAATGTCCTACTCCACCAATGTGACCTTTGCCATGTTGCG TGCTGCGCGTCTGGATGGTCGGATTGCCTTTTTGGACCCGCCGCTTTTGGAAACAACACGTGGCGTGGTGGTGCACCAGA GCCGGCCGGAGCTTCTGGAGCGGATCAATGCGGTGCTGCCCCAACTTGAGGCCAAGGGCAGCCTGCAGGCGCTGCGCGAG AAATACCTGCTGGCTATTCCGGCGCCTGTGCCGGACACGCTGACCGTGGGGGTACATCATGTGCCGCCTTTTGTGTCGAT CTCTGAGGATGGCACGCCGGGCGGGTTCGGGGTCGAAATTCTTGAGAGCCTCGCGGAACGGGCCGGGCTCAAACTGCGCT ATCAGCGTATTACCGACGCCGAATTTGGCCGCGGCCCGCGACAGGGTGGGGTGGATGTTATGCCGATGATGGCCTCGAAC CCGACCCGTCGCGCGCGAATGGATTTTACCTTTCCCGTGCATCGGGTGCCGTTTTCAATCTTCACCCTGCATGAGGCGGC GATTGCGCCGCAGGGTCTGGATGATCTGATCGGGCTCAGGGTCGGGGTCGAGGATGGCAAGAACGCCGCCCAGTTGGCGG AGGTGCATGGCGGTCTGACGCTTTCGTATCACGAGGGCAAGGACGGCATCATGAACGCGCTGCTGCAAGGGCAGGTGGAT GCCGTGTTGGCGCCCAACTCTGCCTTCACATCGCATCTTGAGCGAAACCACCTGCGCGACAAGGTCCTCATCAGCCGGGA GCCCTTTTATACATCCGAGTCCGGGCCTGCATTGCGATTGGGGCTGGGGGAGGTCCGGGAGGCGCTGAACGCGGTGATCC CGGCCTATCTGATCTCGGAGGATTATGAGCGGCTGCAGCAGGAGTGGTTTGGCACTCCCACCTTCTGGACGTCTGCCCGG CTGCGCATGCTGCTGGCGCTTGGGCTTGCGTTCCTTCTGTTCGCGCTTGGCTTTGGCATCTGGCAAAAGATGCAGCGCTC GCGCGCGCAGGAACGTCAGGCCCGCCTGTTGCAGCAATCGCGCCAGCTTGAGGTCCTGGTGGACGAACTCGAGCGCTCGA ACCGGGAACTCGACAGTTTTGCCGATATTGCCTCTCACGATCTCAAGGAACCGCTGCGCGGCATCCAGTGGCAGGTTCAG GCGCTGCAGGAGCGCGCGGCAGAGGCGCTGCCGGAGGAAATCTGCCGTATCGAGCAGCTCTGCGCACAGATGGAGACCAC GATTTCGGATCTGTTGGCCTCTGCTCAGCATCGCGGCAAGGGCAGTGACATCGCCGACATCGAAACCGGTGACGTGGTCG ATGAGATCCGCACCGAGCTTGCAGAGCTTCTGACAGAGACCAAGGGGGAGCTCCGCGTGGAGACGCCCTTGCCGCGCGTG CATGCCAGCCGAGCCAAAGCCAAGGTCGTGTTTCAGAACCTTATCGCCAATGGTCTGATCTACAATCGGTCCGACACTCC GGTTGTGCGCGTCGGCTATCTGAGCGAGGACACCCCCGACGACAGCGGGCTCTTGCATGTGTTTTATGTGCGCGACAACG GCATCGGCATCGCGACCGAGGATCAGGGGCAGATTTTCCAGCCGGGCGTGCGGGGCAAACACTCTGGCATGCGACGCTTG CCCGGCACCGGGGGAAATGGTCTAGGCCTTTCCTTTGCCAAAGAAATCGTGGAAAGTTACGGCCAGTTGATCGCATTTGA AACCACCCCCGGAGAGGGGACTACCTTTTACTTTTCGCTGCCCAATGCGAAAGGTGAAGAGGCGATTTCTGTGACGGGCG AGGCGAGATTGGCGGACGCAAAATGA
Upstream 100 bases:
>100_bases CGCCAGCGCACAGAAGACCATCCCGACATCGACGGGTTCTATGAAAAGCCGCTGTCGCGTGATGCACTGAACGAGATCCT CTGAGATGGGGGGGCTGCGC
Downstream 100 bases:
>100_bases CCAAGGTTCTGATTGTCGATGACAGCCCGGAGGACACCGAGATGCTGCGCAGGTTCTGCAGCGAGCTGCCCTCCTGCGTG ATCGAGACCGCTGCCAGCGG
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 781; Mature: 781
Protein sequence:
>781_residues MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQEAGFDIEFRHYDRIDEVTAA QARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTERAEQFDPTNLDGKRVAVIPPILGSDPDLLPGATLVNHTNP EAALVSVLSGQADAMSYSTNVTFAMLRAARLDGRIAFLDPPLLETTRGVVVHQSRPELLERINAVLPQLEAKGSLQALRE KYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEILESLAERAGLKLRYQRITDAEFGRGPRQGGVDVMPMMASN PTRRARMDFTFPVHRVPFSIFTLHEAAIAPQGLDDLIGLRVGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVD AVLAPNSAFTSHLERNHLRDKVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSAR LRMLLALGLAFLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSFADIASHDLKEPLRGIQWQVQ ALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGKGSDIADIETGDVVDEIRTELAELLTETKGELRVETPLPRV HASRAKAKVVFQNLIANGLIYNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATEDQGQIFQPGVRGKHSGMRRL PGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAISVTGEARLADAK
Sequences:
>Translated_781_residues MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQEAGFDIEFRHYDRIDEVTAA QARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTERAEQFDPTNLDGKRVAVIPPILGSDPDLLPGATLVNHTNP EAALVSVLSGQADAMSYSTNVTFAMLRAARLDGRIAFLDPPLLETTRGVVVHQSRPELLERINAVLPQLEAKGSLQALRE KYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEILESLAERAGLKLRYQRITDAEFGRGPRQGGVDVMPMMASN PTRRARMDFTFPVHRVPFSIFTLHEAAIAPQGLDDLIGLRVGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVD AVLAPNSAFTSHLERNHLRDKVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSAR LRMLLALGLAFLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSFADIASHDLKEPLRGIQWQVQ ALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGKGSDIADIETGDVVDEIRTELAELLTETKGELRVETPLPRV HASRAKAKVVFQNLIANGLIYNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATEDQGQIFQPGVRGKHSGMRRL PGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAISVTGEARLADAK >Mature_781_residues MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQEAGFDIEFRHYDRIDEVTAA QARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTERAEQFDPTNLDGKRVAVIPPILGSDPDLLPGATLVNHTNP EAALVSVLSGQADAMSYSTNVTFAMLRAARLDGRIAFLDPPLLETTRGVVVHQSRPELLERINAVLPQLEAKGSLQALRE KYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEILESLAERAGLKLRYQRITDAEFGRGPRQGGVDVMPMMASN PTRRARMDFTFPVHRVPFSIFTLHEAAIAPQGLDDLIGLRVGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVD AVLAPNSAFTSHLERNHLRDKVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSAR LRMLLALGLAFLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSFADIASHDLKEPLRGIQWQVQ ALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGKGSDIADIETGDVVDEIRTELAELLTETKGELRVETPLPRV HASRAKAKVVFQNLIANGLIYNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATEDQGQIFQPGVRGKHSGMRRL PGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAISVTGEARLADAK
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=282, Percent_Identity=24.468085106383, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1790346, Length=240, Percent_Identity=25, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI48994928, Length=242, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 85381; Mature: 85381
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQ CHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH EAGFDIEFRHYDRIDEVTAAQARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTE HCCCCEEEHHHCCHHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHCCCHHHEEEEEECCHH RAEQFDPTNLDGKRVAVIPPILGSDPDLLPGATLVNHTNPEAALVSVLSGQADAMSYSTN HHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCHHEEECCC VTFAMLRAARLDGRIAFLDPPLLETTRGVVVHQSRPELLERINAVLPQLEAKGSLQALRE HHHHHHHHHHHCCEEEEECCCHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHH KYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEILESLAERAGLKLRYQRITDA CEEEEECCCCCCCEEECEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC EFGRGPRQGGVDVMPMMASNPTRRARMDFTFPVHRVPFSIFTLHEAAIAPQGLDDLIGLR CCCCCCCCCCCEEEEECCCCCCCCCEEEECCCHHHCCCHHEEHHHHHCCCCCHHHHHHEE VGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVDAVLAPNSAFTSHLERNHLRD ECCCCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHH KVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSAR HEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LRMLLALGLAFLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ADIASHDLKEPLRGIQWQVQALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSDIADIETGDVVDEIRTELAELLTETKGELRVETPLPRVHASRAKAKVVFQNLIANGLI CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEE YNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATEDQGQIFQPGVRGKHSGMRRL ECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEECCCCCEECCCCCCCCCCCCCC PGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAISVTGEARLADA CCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCCC K C >Mature Secondary Structure MLFLGLLTFACALALLMGASLAQSQETVRVPWTEAPPMMMSDAEGQPSGFTVELAQMLAQ CHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH EAGFDIEFRHYDRIDEVTAAQARGETDMLAGVDLIDVFQPQNRISDPIARITVSLAVPTE HCCCCEEEHHHCCHHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHCCCHHHEEEEEECCHH RAEQFDPTNLDGKRVAVIPPILGSDPDLLPGATLVNHTNPEAALVSVLSGQADAMSYSTN HHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCHHEEECCC VTFAMLRAARLDGRIAFLDPPLLETTRGVVVHQSRPELLERINAVLPQLEAKGSLQALRE HHHHHHHHHHHCCEEEEECCCHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHH KYLLAIPAPVPDTLTVGVHHVPPFVSISEDGTPGGFGVEILESLAERAGLKLRYQRITDA CEEEEECCCCCCCEEECEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC EFGRGPRQGGVDVMPMMASNPTRRARMDFTFPVHRVPFSIFTLHEAAIAPQGLDDLIGLR CCCCCCCCCCCEEEEECCCCCCCCCEEEECCCHHHCCCHHEEHHHHHCCCCCHHHHHHEE VGVEDGKNAAQLAEVHGGLTLSYHEGKDGIMNALLQGQVDAVLAPNSAFTSHLERNHLRD ECCCCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHH KVLISREPFYTSESGPALRLGLGEVREALNAVIPAYLISEDYERLQQEWFGTPTFWTSAR HEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LRMLLALGLAFLLFALGFGIWQKMQRSRAQERQARLLQQSRQLEVLVDELERSNRELDSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ADIASHDLKEPLRGIQWQVQALQERAAEALPEEICRIEQLCAQMETTISDLLASAQHRGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSDIADIETGDVVDEIRTELAELLTETKGELRVETPLPRVHASRAKAKVVFQNLIANGLI CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEE YNRSDTPVVRVGYLSEDTPDDSGLLHVFYVRDNGIGIATEDQGQIFQPGVRGKHSGMRRL ECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEECCCCCEECCCCCCCCCCCCCC PGTGGNGLGLSFAKEIVESYGQLIAFETTPGEGTTFYFSLPNAKGEEAISVTGEARLADA CCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]