Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080870
Identifier: 99080870
GI number: 99080870
Start: 1107741
End: 1108124
Strand: Direct
Name: 99080870
Synonym: TM1040_1029
Alternate gene names: NA
Gene position: 1107741-1108124 (Clockwise)
Preceding gene: 99080869
Following gene: 99080871
Centisome position: 34.61
GC content: 53.65
Gene sequence:
>384_bases ATGACGACCTCGTCCCCCCGGATCCTGTTGATCGACGACTGCGATGCGGATCGCTATTTTTTCAAACGCAACCTGCGCAA GCTCGATCCGGAAGCAAGATTGATCGAATTTGCCTATGCGGATGAGGCGCTCGAATATCTGAAGACCCCCGGAAAGGCGC CTGTGGACTTCATCTTTGTCGATATCGACATGCCCAGACTGAACGGGTTTCAATTCGCGGATGTCTATCATTCGCTTTAT CCTGAACTAAAAGGGCATGCGCGGCTTTTTGTCTGCTCGTCCTCCATCGACCCAACGCACCGCCAGCGCACAGAAGACCA TCCCGACATCGACGGGTTCTATGAAAAGCCGCTGTCGCGTGATGCACTGAACGAGATCCTCTGA
Upstream 100 bases:
>100_bases CACGGTGGGCAGCTCGAGGTGGTCGAAGCCGAGACCGGCGGCGCCAGCTTCCGTTTCACCCTACCGGCAGCCCCTGCCGC CCCAGACGGAGCGTGACGCC
Downstream 100 bases:
>100_bases GATGGGGGGGCTGCGCATGCTCTTCTTGGGTCTGTTGACCTTTGCGTGTGCCTTGGCTCTCTTGATGGGCGCCTCTCTGG CGCAATCTCAGGAGACCGTG
Product: response regulator receiver protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MTTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFVDIDMPRLNGFQFADVYHSLY PELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSRDALNEIL
Sequences:
>Translated_127_residues MTTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFVDIDMPRLNGFQFADVYHSLY PELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSRDALNEIL >Mature_126_residues TTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFVDIDMPRLNGFQFADVYHSLYP ELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSRDALNEIL
Specific function: Unknown
COG id: COG0784
COG function: function code T; FOG: CheY-like receiver
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14771; Mature: 14640
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFV CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE DIDMPRLNGFQFADVYHSLYPELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSR EECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCCCCHHHCCCCH DALNEIL HHHHHCC >Mature Secondary Structure TTSSPRILLIDDCDADRYFFKRNLRKLDPEARLIEFAYADEALEYLKTPGKAPVDFIFV CCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE DIDMPRLNGFQFADVYHSLYPELKGHARLFVCSSSIDPTHRQRTEDHPDIDGFYEKPLSR EECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCCCCHHHCCCCH DALNEIL HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA