Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 99080837

GI number: 99080837

Start: 1068111

End: 1069775

Strand: Direct

Name: secD [H]

Synonym: TM1040_0996

Alternate gene names: 99080837

Gene position: 1068111-1069775 (Clockwise)

Preceding gene: 99080836

Following gene: 99080838

Centisome position: 33.37

GC content: 62.04

Gene sequence:

>1665_bases
ATGCTGCAAATTGATACCTGGAAGAGGGTTCTCATCTGGCTGGTCTGTGTGGCCGGCCTTTTGGCTGCCCTGCCCAATGC
GTTCTACACCCGTGTAGAGCAATCCAATGACGCCTGGGCCGCGATCGAGCTTGAAGGCGAAACACCGGAGCGTCTGGATG
TGGCCGCGCAATGGCCCGAGTGGATGCCTTCGGGGCTGGTAAACCTCGGTCTCGATCTGCGCGGTGGCGCGCATCTTCTG
GCCGAAGTGCAGGTGGGCGACGTTTATGCCGCCCGCATGGACGCGCTCTGGCCCGAGGTCCGCAACACCCTGCGCGATGA
GCGCGCAACCATCGGTACGTTCCGCCGTATTCCCGACGCCCCGGCGGATCAGATCCGCCTGCGCCTGTCAGATGAGGCGG
GCATGAGCCGCGCGCTTGAACTGGTGCGTGGGCTGGCCAACCCGGTGACATCGCTCACGGGGGCCGGCGCCACCGACATC
ACGGTGAGCGGCCAGGGCGATGTCATCACCGTCTCGCTCTCTGAAGAGGAAAAACTCGCCTCCGATGACCGTACGGTCCG
CCAGTCGCTCGAGATTATTCGCCGCCGGATCGACGAGGTGGGCACCCGTGAACCCACGATCCAGCGTCAGGGCAGCGACC
GTATTCTCATTCAGGTGCCAGGTATCGGCTCTGCAGCGGAGCTGAAGGAAATCATCGGCACCACCGCGCAGCTGACCTTC
AACCCGGTTGTGAGCCGAGGCTCTGACGCCGAGGCAAACGCCGGGATCGGCAACAAGGTGATCCCCTCGCTGGATGAGCC
GGGCACCTATTACACGGTTGAAACGGCGCCTGTCGTCACCGGCGAAGAGCTGGTGGACGCGCAGCCCGCATTTGACCAGA
ACGGCCAGCCGGCGGTGAACTTCCGCTTCAATACGGCTGGGGCGCGCAAATTCGGTGATTACACCGCTCAGAACATCGGC
GCCCCCTTTGCCATCGTGCTTGATGATGAGGTGATCTCTGCCCCTGTGATCCGGTCGCATATTCCAGGCGGGTCGGGCAT
CATCACCGGGAACTTCACCGTCGAGGAAAGCACACAGCTTGCGGTGCTTTTGCGCGCCGGTGCCCTGCCTGCAAAGCTCG
AGTTTCTCGAAGAGCGCACCATCGGCCCGGAACTGGGCCAGGACAGCATCGACGCGGGCAAGGTTGCCACTGTGGTCGCC
TTTGCCGGGGTGCTGGTTTTCATGATGCTGAGCTATGGGCTCTTTGGGGTCTTTGCCAATGTTGCCTTGATCCTGAACAT
CGCGCTGATCTTTGGCGCGCTGAGCCTGATTGGCGGCACGCTGACCCTGCCGGGTATCGCCGGGATCGTCTTGACGGTTG
GTATGGCGGTCGACGCCAACGTGCTGATCTTTGAGCGCATCCGCGAAGAGCTGAAGGCCGGCCGTGGTCCGGCCCGCGCC
ATCGATGAGGGCTACTCCAAGGCGCTCTCGGCGATTGTGGACGCCAATATCACCACGTTCATCACCGCCGTGATCCTGTT
TGCAATGGGCTCCGGTCCGGTGCGTGGGTTTGCAATCACGCTTGGCCTCGGCATTCTTACGTCCGTTTTCACCGCGATCT
TTGTCACCCGACTGATCATCGTGATGTGGTTCGAACGTCGCCGTCCAAAAACCATCGAGGTATAA

Upstream 100 bases:

>100_bases
GTGAAGGTGCGCGTGGTGAAATCCACCATCGCTCAGGTGCTGAACAAGACCGAGCCCGCATCCTGAACCCCGCCGCTGAG
GCAACGAAAAAGGCAGGGTA

Downstream 100 bases:

>100_bases
CTGATGCGCTTGAAACTGGTTCGCGAAGGCACCTCCTTCGACTTCTTCAGGCTCTGGAAGCTCTGGCTCGGCATCTCGGC
GATGATGGTTGTGATCGGCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGLVNLGLDLRGGAHLL
AEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIRLRLSDEAGMSRALELVRGLANPVTSLTGAGATDI
TVSGQGDVITVSLSEEEKLASDDRTVRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTF
NPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNGQPAVNFRFNTAGARKFGDYTAQNIG
APFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQLAVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVA
FAGVLVFMMLSYGLFGVFANVALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARA
IDEGYSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPKTIEV

Sequences:

>Translated_554_residues
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGLVNLGLDLRGGAHLL
AEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIRLRLSDEAGMSRALELVRGLANPVTSLTGAGATDI
TVSGQGDVITVSLSEEEKLASDDRTVRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTF
NPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNGQPAVNFRFNTAGARKFGDYTAQNIG
APFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQLAVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVA
FAGVLVFMMLSYGLFGVFANVALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARA
IDEGYSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPKTIEV
>Mature_554_residues
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGLVNLGLDLRGGAHLL
AEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIRLRLSDEAGMSRALELVRGLANPVTSLTGAGATDI
TVSGQGDVITVSLSEEEKLASDDRTVRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTF
NPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNGQPAVNFRFNTAGARKFGDYTAQNIG
APFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQLAVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVA
FAGVLVFMMLSYGLFGVFANVALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARA
IDEGYSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPKTIEV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=534, Percent_Identity=37.2659176029963, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 59273; Mature: 59273

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPE
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCH
WMPSGLVNLGLDLRGGAHLLAEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDA
HCCCCHHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PADQIRLRLSDEAGMSRALELVRGLANPVTSLTGAGATDITVSGQGDVITVSLSEEEKLA
CHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCHHHHH
SDDRTVRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHEEEE
NPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNGQPAVN
CHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCEEE
FRFNTAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQL
EEEECCCCCHHCCHHHHHCCCCEEEEECCHHHHCCHHHHCCCCCCEEEEECEEECCCCCE
AVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGLFGVFAN
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH
IDEGYSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLII
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMWFERRRPKTIEV
HHHHHCCCCCCCCC
>Mature Secondary Structure
MLQIDTWKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPE
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCH
WMPSGLVNLGLDLRGGAHLLAEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDA
HCCCCHHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PADQIRLRLSDEAGMSRALELVRGLANPVTSLTGAGATDITVSGQGDVITVSLSEEEKLA
CHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCHHHHH
SDDRTVRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHEEEE
NPVVSRGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNGQPAVN
CHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCEEE
FRFNTAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQL
EEEECCCCCHHCCHHHHHCCCCEEEEECCHHHHCCHHHHCCCCCCEEEEECEEECCCCCE
AVLLRAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGLFGVFAN
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH
IDEGYSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLII
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMWFERRRPKTIEV
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]