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The map label for this gene is secF [H]

Identifier: 99080838

GI number: 99080838

Start: 1069779

End: 1070747

Strand: Direct

Name: secF [H]

Synonym: TM1040_0997

Alternate gene names: 99080838

Gene position: 1069779-1070747 (Clockwise)

Preceding gene: 99080837

Following gene: 99080839

Centisome position: 33.42

GC content: 59.13

Gene sequence:

>969_bases
ATGCGCTTGAAACTGGTTCGCGAAGGCACCTCCTTCGACTTCTTCAGGCTCTGGAAGCTCTGGCTCGGCATCTCGGCGAT
GATGGTTGTGATCGGCTTTGCCTCCTTTGCCATCCAGGGGCTGAACTTTGGGATCGACTTTCGGGGCGGTACCACCATCC
GCACCGAGGCGACGCAGGATCTCGACATCGGCGTCTACCGCGAGGCCATCGCGCCTCTGGAGCTAGGTGACATCACCATC
ACCGAGGTGTTTGATCCAACTTTTGACGAAGATCAGCATGTCGCCATGATCCGCATTGAGGCGCAGGAAGATGGCGAGGC
GCTCTCCAGCGATGTGATCGCAGCGGTGCAGGGCGCGCTCGACGCGGTGGCGCCGGGGATCAAGTTCATCTCTGTCGAAA
GCGTCGGGCCCAAGGTCTCGGGCGAGTTGGTGCAAACGGCCGTGATCGCGGTGGCCTTGGCGATTGGCGCGGTTCTGATC
TACATCTGGCTGCGGTTCGAGTGGCAGTTTGCCCTCGGCGCGGTGGCCGCCCTTGTGCATGACGTCATCCTGACCATCGG
CGTGTTCTCGGAACTGCAGATCAAATTCGATCTGGCCATCATCGCGGCGCTCCTGACCATCGTGGGGTATTCGCTGAATG
ATACGGTGGTCGTGTTTGACCGCGTGCGCGAGAACCTGCGTCGCTACAAGAAAAAGCCGCTGGCCGAGGTGCTCAATATC
TCGATCAACGAGACCCTGAGCCGAACCGTGATGACCTCGGTGACAACGCTTCTGGCCTTGATCTCGCTCTATGTTCTGGG
CGGCGATGTGATCCGCGGGTTTGTCTTTGCGATGATCTGGGGCGTTATCGTCGGCACCTATTCGTCGATCTTTGTGGCCT
CCACGATCCTGTTGTGGCTTGGCGTGAAGCGCGACTGGAGCAAGAACAACGACACCACCGGAAATCAGTTCGCCAATATT
GACGCCTGA

Upstream 100 bases:

>100_bases
CGGCATTCTTACGTCCGTTTTCACCGCGATCTTTGTCACCCGACTGATCATCGTGATGTGGTTCGAACGTCGCCGTCCAA
AAACCATCGAGGTATAACTG

Downstream 100 bases:

>100_bases
TCCTTGTGGTTCGAGATGAGGAGGCAGCCGCGACCTGGTGTCGCGGCTGTTTCGTTTCTGGACCTTTGACCGGGGGCGCT
GCCCCCGGACCCCCGGGATA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQDLDIGVYREAIAPLELGDITI
TEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGALDAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLI
YIWLRFEWQFALGAVAALVHDVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNI
SINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLWLGVKRDWSKNNDTTGNQFANI
DA

Sequences:

>Translated_322_residues
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQDLDIGVYREAIAPLELGDITI
TEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGALDAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLI
YIWLRFEWQFALGAVAALVHDVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNI
SINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLWLGVKRDWSKNNDTTGNQFANI
DA
>Mature_322_residues
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQDLDIGVYREAIAPLELGDITI
TEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGALDAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLI
YIWLRFEWQFALGAVAALVHDVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNI
SINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLWLGVKRDWSKNNDTTGNQFANI
DA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=295, Percent_Identity=38.9830508474576, Blast_Score=212, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35257; Mature: 35257

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQD
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCC
LDIGVYREAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGAL
CCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
DAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCHHHHHHCC
SINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKRDWSKNNDTTGNQFANIDA
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQD
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCC
LDIGVYREAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGAL
CCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
DAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCHHHHHHCC
SINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKRDWSKNNDTTGNQFANIDA
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA