| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is engA
Identifier: 99080832
GI number: 99080832
Start: 1062663
End: 1064141
Strand: Direct
Name: engA
Synonym: TM1040_0991
Alternate gene names: 99080832
Gene position: 1062663-1064141 (Clockwise)
Preceding gene: 99080831
Following gene: 99080833
Centisome position: 33.2
GC content: 61.8
Gene sequence:
>1479_bases ATGTCGTTTACGCTCGCCATCGTGGGGCGCCCAAATGTGGGCAAGTCCACTTTGTTCAACCGCCTTGTCGGCAAGAAACT CGCGCTGGTTGATGACCAGCCCGGAGTCACGCGCGACCTGCGCGAGGGCGAGGCACGGCTGGGCGATCTGCGCTTTACGG TGATCGACAGCGCCGGTCTGGAAGATGCAACCGACAACAGCCTCGAGGGCCGCATGCGCCGCCTCACCGAACGTGCGGTG GAAATGGCCGATGTGTGCCTGTTCCTGATCGATGCGCGCGCAGGCGTGACACCCACCGATGAGGTTTTTGCCGAGATCCT GCGCAAGAAATCCGCGCATGTCATTCTGGCGGCGAATAAATCCGAAGGGTCTGCGGCGGATGCGGGCGTGCTGGAGGCCT ATGGCCTCGGGCTGGGGGAGCCGATCCGCATGTCCGGTGAGCATGGCGAAGGGCTGAATGATCTCTATTCCGAACTGCTG CCGGTTTCGGAAAAGTTCGAAAAACTCGCCGAGGAGACCGCGCCCGAAACGGATGTGGTCCTCGACGAGGATGAAAACGA GGCGTTCAACGCGGGCGAAGAGATCGCGGCCACGCCGGTTCCGACACTTGAAAAGCCGCTTCAGGTGGCCGTTGTCGGGC GCCCGAATGCCGGGAAATCCACGCTGATCAACAAGATCCTTGGCGAGGACCGTCTCTTGACCGGTCCCGAAGCCGGGATC ACCCGCGATGCCATCAGCCTCAAGATCGACTGGTCCGGCACGCCGATGCGAATCTTTGACACCGCCGGCATGCGCAAGAA GGCCAAGGTGCAGGAAAAGCTCGAGAAACTCTCGGTCTCTGATGGCCTGCGCGCGGTCAAATTTGCCGAGGTCGTGGTGG TTTTGCTTGATGCGGCGATCCCGTTTGAACAGCAGGATCTGCGGATTGCGGACCTTGCCGAGCGCGAGGGGCGCGCGGTG GTGATCGCGGTCAACAAATGGGACATCGAGGACGAAAAGCAGGAAAAGCTCAAAGCGCTGAAAGAAGCCTTCGAGCGCCT GTTGCCGCAGCTGCGCGGCGCGCCTCTGGTCACGGTTTCGGCCAAGACGGGCCGGGGGCTAGACCGGCTGCATGCCGCAA TCATGAAAGCCCATGACGTGTGGAACCGTCGGGTGCCGACGGCTGCGCTCAACCGTTGGCTTGCGGGGATGCTGGAACAG CACCCGCCGCCCGCACCGCAGGGCAAGCGCATCAAGCTGCGCTACATGACCCAAGCCAAGACCCGTCCGCCGGGCTTTGT GGTGATGTGCTCGCATCCCGACAAAATGCCCGCGAGTTACAACCGCTATCTGGTGAACGGGCTGCGGGAAGATTTTGATA TGCCGGGCACGCCCATTCGTCTGACTTTGCGCGGTCAGGGGGACAAGAACCCCTATAAGGGCAAGAAAAAGTCGACGCCC TCGCGTCTGCGCAAACACCTTGAAGGCCGCAAGAGCTGA
Upstream 100 bases:
>100_bases GCAAATTTCTCTGCCATGGGCGCGTTTGAATTTATTTACTGGCGTGTGCAGCAAAGATACGCTATGCGCGCGGTTCACCC ATCACGGAAAGTTCTGTTCC
Downstream 100 bases:
>100_bases GCGACCCGATCTGAACGGGGTGCGGCGTGCAAACAGGCGTGCCGCGCCAGATCCTGCCTTTCCTCTGCCGTGACCCTGAT CCCCCCAGCCGGTTGTTGCA
Product: GTP-binding protein EngA
Products: NA
Alternate protein names: GTP-binding protein EngA
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDATDNSLEGRMRRLTERAV EMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELL PVSEKFEKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI TRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAV VIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQ HPPPAPQGKRIKLRYMTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTP SRLRKHLEGRKS
Sequences:
>Translated_492_residues MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDATDNSLEGRMRRLTERAV EMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELL PVSEKFEKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI TRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAV VIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQ HPPPAPQGKRIKLRYMTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTP SRLRKHLEGRKS >Mature_491_residues SFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDATDNSLEGRMRRLTERAVE MADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLP VSEKFEKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGIT RDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVV IAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQH PPPAPQGKRIKLRYMTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTPS RLRKHLEGRKS
Specific function: GTPase that plays an essential role in the late steps of ribosome biogenesis
COG id: COG1160
COG function: function code R; Predicted GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH-like domain
Homologues:
Organism=Escherichia coli, GI87082120, Length=487, Percent_Identity=38.8090349075975, Blast_Score=312, Evalue=3e-86, Organism=Escherichia coli, GI2367268, Length=162, Percent_Identity=32.7160493827161, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788919, Length=127, Percent_Identity=32.2834645669291, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17507259, Length=125, Percent_Identity=32, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323665, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DER_SILST (Q1GHZ2)
Other databases:
- EMBL: CP000377 - RefSeq: YP_612986.1 - ProteinModelPortal: Q1GHZ2 - SMR: Q1GHZ2 - STRING: Q1GHZ2 - GeneID: 4078153 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_0991 - NMPDR: fig|292414.1.peg.3066 - eggNOG: COG1160 - HOGENOM: HBG592135 - OMA: TRDRTYQ - PhylomeDB: Q1GHZ2 - ProtClustDB: PRK00093 - BioCyc: SSP292414:TM1040_0991-MONOMER - GO: GO:0005622 - HAMAP: MF_00195 - InterPro: IPR016484 - InterPro: IPR015946 - InterPro: IPR002917 - InterPro: IPR001806 - InterPro: IPR005225 - Gene3D: G3DSA:3.30.300.20 - PIRSF: PIRSF006485 - PRINTS: PR00449 - TIGRFAMs: TIGR03594 - TIGRFAMs: TIGR00231
Pfam domain/function: PF01926 MMR_HSR1
EC number: NA
Molecular weight: Translated: 54108; Mature: 53977
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGL CCEEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCC EDATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECC SEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPVSEKFEKLAEETAPETDVV CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEE LDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI EECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCC TRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAI CCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC PFEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVS CCCCCCCCHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE AKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQHPPPAPQGKRIKLRYMTQAK CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC TRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTP CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCH SRLRKHLEGRKS HHHHHHHCCCCC >Mature Secondary Structure SFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGL CEEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCC EDATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECC SEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPVSEKFEKLAEETAPETDVV CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEE LDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI EECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCC TRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAI CCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC PFEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVS CCCCCCCCHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE AKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQHPPPAPQGKRIKLRYMTQAK CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC TRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGKKKSTP CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCH SRLRKHLEGRKS HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA